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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:3928.9 nTPM
FANTOM5:1661.7 Scaled Tags Per Million
Pig:1147.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA013143Antibody CAB000118
Glial cells MediumMedium
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3928.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3928.9
Samples: 300

Max nTPM: 15586.0
Min nTPM: 757.6
Std nTPM: 2286.0
Median nTPM: 3441.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 15586.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 15194.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 13525.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11662.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 11225.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 10720.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 10499.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9732.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 9568.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 9046.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 8956.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 8629.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 8612.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8559.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 8083.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 8022.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 7842.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 7704.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 7309.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 7265.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 7235.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 7221.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 7214.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 7115.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6996.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 6922.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 6922.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 6864.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 6805.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 6769.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6745.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 6741.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 6740.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 6640.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 6630.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 6493.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 6450.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 6436.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 6409.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 6193.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 6184.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 6141.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 6115.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 6066.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 6041.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 6001.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5997.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 5911.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 5826.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 5738.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 5697.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 5692.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 5659.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 5602.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 5542.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 5523.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 5500.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 5436.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5404.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5340.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 5339.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 5305.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5294.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 5237.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 5212.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 5145.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 5138.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 5114.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 5098.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 5083.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 5048.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 5020.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 5020.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 5003.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4970.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 4932.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4874.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 4844.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 4833.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4819.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 4815.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4814.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 4805.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4800.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 4755.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 4748.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4734.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 4704.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 4694.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 4661.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4644.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 4608.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 4569.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 4568.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 4560.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 4556.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 4540.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 4528.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 4511.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 4413.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 4355.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 4241.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 4208.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 4184.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4140.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4123.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 4122.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 4097.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 4091.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 4029.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 4006.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3991.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 3989.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 3982.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3974.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3972.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 3952.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 3913.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 3908.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3888.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3877.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3874.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 3873.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3867.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3847.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3846.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3843.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 3841.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 3806.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 3796.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 3792.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3760.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 3759.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 3755.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 3714.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3712.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 3691.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 3690.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3658.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 3620.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 3582.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 3543.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 3538.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 3533.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 3529.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3518.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3495.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 3466.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 3458.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3449.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 3433.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3402.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3390.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 3384.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3368.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3348.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 3342.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 3271.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3237.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 3233.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 3210.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 3195.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3192.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3183.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 3106.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 3088.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 3064.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3063.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 3059.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 3056.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 3036.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 3000.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 2989.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2986.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2973.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2955.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2955.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2937.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2925.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2923.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2908.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2906.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2904.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2899.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2879.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2874.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 2870.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2829.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2822.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2816.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2813.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2811.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2786.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2786.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2784.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2779.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2778.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 2743.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2716.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2705.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2704.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 2691.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2609.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2599.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2587.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2583.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2583.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2573.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2564.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2552.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2548.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2530.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2528.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2528.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2525.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2505.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 2499.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2496.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2481.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2472.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2466.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2431.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2430.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2428.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 2400.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 2383.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2363.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2329.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2318.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2300.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2293.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 2243.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2235.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2229.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 2213.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2189.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2173.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2168.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2164.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2144.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2137.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2124.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2123.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2092.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2090.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2070.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2026.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2017.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1995.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1959.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1908.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1901.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1897.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1890.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1881.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1877.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1863.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1855.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1849.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1840.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1815.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1798.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1789.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1778.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1778.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1771.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1759.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1745.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1725.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1707.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1696.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1613.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1590.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1566.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1537.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1534.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1510.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1435.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1417.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1404.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1391.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1365.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1344.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1322.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1316.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1262.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1260.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1246.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1234.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1213.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1207.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1207.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1182.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1160.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 1157.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1140.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 942.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 932.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 830.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 757.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1661.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1661.7
FF:10164-103B2 76 years, female 1661.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1147.8
Pig sample Sample description nTPM
Caudate
nTPM: 1147.8
Samples: 4

Max nTPM: 1377.1
Min nTPM: 950.5
Sample A Female 1062.2
Sample B Female 1377.1
Sample C Male 1201.3
Sample D Male 950.5

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