We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
USP14
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • USP14
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:15.8 nTPM
FANTOM5:99.5 Scaled Tags Per Million
Pig:59.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001308
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.8
Samples: 300

Max nTPM: 39.1
Min nTPM: 8.4
Std nTPM: 3.9
Median nTPM: 15.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 39.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 35.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 28.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 27.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 25.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 25.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 24.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 24.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 24.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 24.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 24.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 23.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 23.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 23.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 23.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 23.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 22.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 22.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 22.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 22.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 21.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 21.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 21.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 21.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 21.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 21.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 21.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 21.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 20.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 20.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 20.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 20.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 20.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 20.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 20.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 19.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 19.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 19.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 19.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 19.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 19.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 19.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 19.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 19.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 19.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 19.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 19.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 19.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 19.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 19.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 19.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 19.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 19.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 19.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 18.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 18.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 18.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 18.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 18.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 18.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 18.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 18.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 18.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 18.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 18.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 18.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 18.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 18.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 18.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 18.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 18.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 18.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 18.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 18.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 17.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 17.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 17.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 17.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 17.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 17.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 17.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 17.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 17.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 17.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 17.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 17.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 17.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 17.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 17.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 17.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 17.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 17.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 17.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 17.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 16.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 16.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 16.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 16.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 16.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 16.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 16.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 16.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 16.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 16.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 16.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 16.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 16.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 16.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 16.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 16.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 16.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 16.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 16.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 16.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 16.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 16.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 16.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 16.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 16.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 16.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 16.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 16.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 16.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 16.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 16.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 16.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 16.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 15.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 15.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 15.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 15.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 15.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 15.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 15.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 15.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 15.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 15.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 15.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 15.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 15.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 15.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 15.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 15.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 15.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 15.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 15.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 15.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 15.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 15.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 15.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 15.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 15.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 15.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 15.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 15.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 15.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 15.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 15.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 15.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 15.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 14.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 14.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 14.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 14.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 14.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 14.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 14.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 14.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 14.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 14.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 14.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 14.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 14.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 14.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 14.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 14.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 14.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 14.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 14.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 14.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 14.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 14.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 14.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 14.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 14.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 14.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 14.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 14.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 14.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 14.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 14.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 14.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 14.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 14.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 13.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 13.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 13.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 13.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 13.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 13.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 13.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 13.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 13.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 13.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 13.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 13.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 13.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 13.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 13.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 13.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 13.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 13.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 13.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 13.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 13.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 13.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 13.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 13.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 13.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 13.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 13.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 13.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 13.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 13.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 13.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 13.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 13.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 13.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 13.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 13.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 13.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 13.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 12.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 12.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 12.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 12.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 12.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 12.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 12.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 12.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 12.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 12.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 12.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 12.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 12.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 12.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 12.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 12.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 12.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 12.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 12.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 12.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 12.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 12.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 12.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 12.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 12.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 12.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 11.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 11.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 11.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 11.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 11.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 11.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 11.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 11.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 11.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 11.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 11.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 11.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 11.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 11.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 11.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 11.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 11.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 11.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 11.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 11.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 11.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 10.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 10.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 10.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 10.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 10.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 10.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 10.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 10.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 10.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 10.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 9.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 9.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 9.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 9.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 9.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 8.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.5
FF:10164-103B2 76 years, female 99.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.0
Pig sample Sample description nTPM
Caudate
nTPM: 59.0
Samples: 4

Max nTPM: 63.3
Min nTPM: 54.1
Sample A Female 62.3
Sample B Female 56.1
Sample C Male 63.3
Sample D Male 54.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo