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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PLS3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:25.5 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:18.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA020433
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.5
Samples: 300

Max nTPM: 54.4
Min nTPM: 10.3
Std nTPM: 8.3
Median nTPM: 24.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 54.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 48.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 48.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 47.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 46.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 46.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 46.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 44.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 42.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 41.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 41.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 40.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 40.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 40.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 39.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 39.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 39.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 39.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 38.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 38.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 38.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 38.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 38.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 38.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 38.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 38.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 38.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 38.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 38.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 37.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 37.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 37.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 37.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 36.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 36.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 36.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 36.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 35.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 35.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 35.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 35.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 35.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 34.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 34.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 34.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 33.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 33.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 33.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 33.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 33.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 33.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 33.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 33.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 33.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 33.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 33.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 33.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 32.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 32.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 32.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 32.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 32.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 32.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 32.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 32.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 32.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 31.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 31.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 31.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 31.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 31.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 31.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 31.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 31.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 31.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 30.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 30.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 30.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 30.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 30.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 30.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 30.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 30.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 30.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 30.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 30.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 29.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 29.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 29.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 29.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 29.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 29.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 29.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 29.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 29.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 29.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 29.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 28.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 28.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 28.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 28.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 28.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 28.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 28.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 28.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 28.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 28.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 28.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 28.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 28.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 27.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 27.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 27.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 27.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 27.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 27.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 27.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 27.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 27.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 27.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 27.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 26.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 26.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 26.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 26.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 26.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 26.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 26.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 26.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 26.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 26.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 26.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 26.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 26.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 26.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 25.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 25.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 25.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 25.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 25.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 25.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 25.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 25.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 25.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 25.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 25.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 24.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 24.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 24.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 24.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 24.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 24.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 24.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 24.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 24.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 24.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 24.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 24.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 24.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 24.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 24.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 24.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 23.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 23.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 23.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 23.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 23.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 23.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 23.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 23.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 23.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 23.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 23.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 23.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 23.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 23.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 23.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 23.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 23.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 23.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 22.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 22.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 22.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 22.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 22.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 22.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 22.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 22.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 22.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 22.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 22.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 22.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 22.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 22.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 21.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 21.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 21.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 21.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 21.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 21.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 21.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 21.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 21.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 21.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 21.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 21.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 20.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 20.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 20.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 20.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 20.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 20.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 20.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 20.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 20.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 20.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 20.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 20.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 19.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 19.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 19.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 19.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 19.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 19.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 19.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 19.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 19.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 19.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 19.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 19.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 18.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 18.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 18.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 18.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 17.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 17.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 17.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 17.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 17.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 17.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 17.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 17.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 17.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 17.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 17.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 16.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 16.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 16.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 16.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 16.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 16.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 16.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 16.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 16.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 16.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 16.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 16.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 16.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 16.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 16.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 15.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 15.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 15.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 15.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 15.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 15.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 14.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 14.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 14.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 14.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 14.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 14.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 14.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 14.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 14.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 14.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 14.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 14.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 13.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 13.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 13.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 13.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 13.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 13.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 13.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 12.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 12.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 12.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 12.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 12.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 12.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 12.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 12.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 12.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 11.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 11.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 11.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 11.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 10.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 10.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.7
FF:10164-103B2 76 years, female 24.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.5
Pig sample Sample description nTPM
Caudate
nTPM: 18.6
Samples: 4

Max nTPM: 21.7
Min nTPM: 13.7
Sample A Female 21.7
Sample B Female 13.7
Sample C Male 18.0
Sample D Male 20.8

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