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CD99L2
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • CD99L2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:61.5 nTPM
FANTOM5:124.4 Scaled Tags Per Million
Pig:33.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA038782Antibody HPA038783
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 61.5
Samples: 300

Max nTPM: 193.7
Min nTPM: 23.4
Std nTPM: 13.8
Median nTPM: 60.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 193.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 101.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 92.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 91.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 86.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 84.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 84.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 84.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 83.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 82.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 82.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 81.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 81.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 81.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 80.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 80.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 79.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 78.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 77.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 77.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 77.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 77.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 77.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 76.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 76.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 76.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 75.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 75.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 75.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 75.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 75.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 75.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 75.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 74.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 74.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 74.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 74.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 74.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 74.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 74.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 74.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 74.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 73.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 73.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 73.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 73.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 73.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 73.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 72.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 72.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 72.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 72.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 72.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 72.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 71.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 71.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 71.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 71.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 71.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 71.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 71.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 70.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 70.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 70.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 70.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 70.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 70.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 69.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 69.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 69.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 69.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 69.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 69.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 69.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 69.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 68.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 68.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 68.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 68.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 68.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 68.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 67.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 67.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 67.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 67.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 67.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 67.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 67.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 67.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 67.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 66.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 66.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 66.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 66.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 66.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 66.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 66.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 65.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 65.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 65.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 65.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 65.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 65.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 65.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 65.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 65.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 64.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 64.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 64.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 64.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 64.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 64.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 64.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 64.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 64.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 64.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 64.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 64.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 64.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 64.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 63.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 63.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 63.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 63.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 63.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 63.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 63.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 62.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 62.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 62.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 62.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 62.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 62.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 62.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 62.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 62.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 61.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 61.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 61.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 61.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 61.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 60.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 60.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 60.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 60.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 60.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 60.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 60.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 60.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 60.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 60.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 60.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 60.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 60.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 60.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 60.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 60.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 59.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 59.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 59.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 59.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 59.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 59.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 59.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 59.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 58.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 58.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 58.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 58.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 58.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 58.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 58.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 58.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 58.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 57.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 57.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 57.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 57.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 57.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 57.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 57.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 57.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 57.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 57.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 57.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 57.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 57.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 57.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 57.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 57.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 57.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 56.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 56.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 56.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 56.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 56.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 56.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 56.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 56.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 56.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 56.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 56.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 55.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 55.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 55.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 55.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 55.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 55.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 55.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 55.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 55.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 55.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 55.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 54.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 54.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 54.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 54.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 54.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 54.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 54.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 54.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 54.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 54.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 54.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 54.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 54.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 54.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 54.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 53.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 53.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 53.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 53.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 53.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 53.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 53.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 53.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 53.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 52.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 52.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 52.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 52.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 52.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 52.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 52.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 52.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 52.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 52.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 52.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 51.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 51.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 51.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 51.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 51.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 51.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 50.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 50.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 49.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 49.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 49.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 49.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 48.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 48.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 48.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 48.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 48.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 47.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 47.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 47.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 47.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 46.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 46.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 46.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 45.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 45.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 45.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 45.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 45.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 45.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 44.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 44.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 43.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 43.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 43.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 42.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 42.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 41.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 40.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 40.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 40.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 39.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 39.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 38.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 37.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 37.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 35.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 34.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 33.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 32.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 26.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 23.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

124.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.4
FF:10164-103B2 76 years, female 124.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.3
Pig sample Sample description nTPM
Caudate
nTPM: 33.3
Samples: 4

Max nTPM: 42.2
Min nTPM: 24.6
Sample A Female 24.6
Sample B Female 36.1
Sample C Male 42.2
Sample D Male 30.4

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