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  • SUMMARY

  • TISSUE

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  • USP11
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:100.2 nTPM
FANTOM5:301.1 Scaled Tags Per Million
Pig:71.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003103Antibody HPA037536
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 100.2
Samples: 300

Max nTPM: 212.3
Min nTPM: 35.2
Std nTPM: 34.4
Median nTPM: 96.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 212.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 209.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 206.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 201.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 186.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 178.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 176.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 168.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 168.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 166.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 165.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 164.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 164.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 163.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 163.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 159.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 157.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 156.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 155.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 155.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 154.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 153.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 152.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 152.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 152.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 150.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 150.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 150.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 149.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 148.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 147.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 146.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 145.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 145.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 145.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 144.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 143.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 142.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 141.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 141.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 141.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 139.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 139.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 136.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 135.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 135.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 134.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 134.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 134.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 134.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 134.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 133.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 133.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 133.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 133.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 133.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 133.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 132.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 132.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 132.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 131.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 131.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 130.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 130.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 129.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 128.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 128.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 128.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 128.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 126.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 125.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 125.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 124.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 124.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 123.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 123.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 122.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 122.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 121.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 120.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 120.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 120.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 119.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 119.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 118.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 117.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 117.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 117.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 117.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 116.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 116.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 116.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 115.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 115.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 114.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 114.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 114.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 113.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 113.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 113.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 113.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 113.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 112.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 112.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 112.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 111.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 111.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 111.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 110.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 110.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 109.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 108.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 108.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 108.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 108.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 108.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 107.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 106.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 106.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 105.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 105.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 105.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 105.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 104.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 104.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 104.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 104.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 103.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 103.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 103.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 102.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 101.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 101.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 100.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 100.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 100.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 100.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 99.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 99.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 99.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 98.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 98.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 98.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 97.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 97.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 96.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 96.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 96.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 95.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 95.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 95.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 94.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 94.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 92.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 91.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 91.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 91.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 91.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 91.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 91.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 90.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 90.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 90.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 89.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 89.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 89.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 89.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 88.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 88.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 88.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 87.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 86.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 86.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 86.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 85.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 85.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 85.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 85.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 84.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 84.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 84.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 84.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 84.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 84.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 83.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 83.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 83.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 82.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 82.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 81.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 81.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 81.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 81.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 81.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 80.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 80.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 80.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 80.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 79.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 79.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 77.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 76.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 76.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 76.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 75.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 74.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 74.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 73.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 73.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 73.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 73.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 73.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 73.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 73.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 72.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 72.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 72.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 72.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 72.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 72.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 71.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 71.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 71.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 71.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 71.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 70.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 70.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 70.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 70.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 69.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 69.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 69.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 69.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 68.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 68.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 68.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 68.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 68.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 67.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 66.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 66.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 65.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 65.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 65.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 65.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 63.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 63.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 63.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 63.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 62.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 62.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 62.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 61.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 61.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 61.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 61.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 61.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 61.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 60.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 60.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 60.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 60.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 60.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 60.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 59.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 59.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 58.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 58.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 58.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 58.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 58.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 57.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 57.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 56.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 55.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 54.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 54.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 54.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 53.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 53.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 53.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 52.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 52.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 51.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 50.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 49.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 48.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 48.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 42.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 40.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 40.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 35.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

301.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 301.1
FF:10164-103B2 76 years, female 301.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.0
Pig sample Sample description nTPM
Caudate
nTPM: 71.0
Samples: 4

Max nTPM: 80.3
Min nTPM: 60.6
Sample A Female 60.6
Sample B Female 76.8
Sample C Male 80.3
Sample D Male 66.4

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