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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PLLP
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:119.3 nTPM
FANTOM5:75.9 Scaled Tags Per Million
Pig:41.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041862
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 119.3
Samples: 300

Max nTPM: 354.2
Min nTPM: 26.8
Std nTPM: 60.7
Median nTPM: 104.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 354.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 338.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 328.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 325.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 319.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 270.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 266.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 264.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 263.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 259.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 247.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 244.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 242.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 241.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 240.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 239.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 234.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 229.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 229.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 228.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 225.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 219.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 218.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 215.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 212.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 211.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 207.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 207.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 202.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 198.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 197.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 195.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 190.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 190.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 188.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 187.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 182.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 182.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 179.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 179.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 178.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 175.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 174.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 174.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 174.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 174.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 173.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 173.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 173.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 171.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 171.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 171.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 170.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 170.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 170.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 168.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 168.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 168.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 168.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 165.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 165.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 164.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 162.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 162.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 161.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 161.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 159.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 159.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 159.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 159.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 156.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 156.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 155.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 154.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 153.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 153.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 152.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 151.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 150.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 150.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 149.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 149.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 148.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 148.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 147.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 147.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 147.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 146.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 146.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 145.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 144.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 144.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 144.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 143.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 141.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 141.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 139.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 139.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 138.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 138.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 138.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 137.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 137.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 135.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 135.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 134.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 133.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 131.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 130.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 130.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 130.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 129.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 128.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 128.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 127.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 126.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 126.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 126.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 125.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 125.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 125.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 125.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 124.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 122.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 121.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 120.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 120.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 120.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 120.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 119.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 118.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 117.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 117.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 117.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 116.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 116.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 115.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 114.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 113.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 112.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 112.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 110.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 110.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 109.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 108.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 107.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 106.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 105.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 105.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 105.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 104.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 104.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 104.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 103.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 103.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 103.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 103.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 102.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 102.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 101.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 101.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 101.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 101.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 101.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 100.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 99.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 98.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 98.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 98.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 97.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 97.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 96.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 96.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 96.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 96.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 95.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 94.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 93.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 93.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 92.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 92.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 92.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 92.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 91.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 91.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 90.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 90.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 90.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 89.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 88.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 88.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 88.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 87.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 87.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 87.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 87.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 86.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 86.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 86.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 86.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 84.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 84.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 84.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 83.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 82.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 80.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 79.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 79.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 78.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 78.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 78.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 78.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 78.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 77.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 76.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 76.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 75.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 75.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 75.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 75.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 74.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 74.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 73.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 73.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 72.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 72.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 72.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 71.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 71.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 71.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 70.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 70.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 69.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 69.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 68.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 68.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 67.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 67.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 67.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 66.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 66.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 66.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 66.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 65.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 64.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 63.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 63.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 62.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 62.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 62.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 62.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 61.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 59.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 59.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 59.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 59.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 58.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 57.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 57.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 57.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 56.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 56.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 56.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 55.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 54.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 54.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 53.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 53.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 53.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 51.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 50.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 50.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 50.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 49.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 48.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 48.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 47.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 47.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 46.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 46.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 45.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 45.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 44.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 43.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 42.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 42.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 42.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 42.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 41.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 39.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 38.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 36.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 34.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 32.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 28.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 27.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 26.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.9
FF:10164-103B2 76 years, female 75.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.9
Pig sample Sample description nTPM
Caudate
nTPM: 41.9
Samples: 4

Max nTPM: 45.4
Min nTPM: 38.5
Sample A Female 45.4
Sample B Female 41.4
Sample C Male 42.4
Sample D Male 38.5

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