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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:353.2 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:0.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051164
Glial cells Not detected
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 353.2
Samples: 300

Max nTPM: 1362.3
Min nTPM: 98.3
Std nTPM: 193.3
Median nTPM: 308.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1362.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1179.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 937.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 932.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 926.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 915.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 912.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 899.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 888.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 829.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 822.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 808.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 797.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 791.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 777.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 771.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 764.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 749.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 702.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 698.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 697.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 665.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 652.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 643.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 632.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 630.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 624.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 619.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 618.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 612.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 611.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 601.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 590.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 588.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 587.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 586.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 574.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 569.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 566.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 564.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 547.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 540.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 534.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 531.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 527.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 524.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 523.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 518.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 513.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 502.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 498.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 491.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 490.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 488.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 483.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 481.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 474.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 471.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 469.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 467.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 467.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 463.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 462.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 459.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 454.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 453.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 449.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 445.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 441.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 438.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 436.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 435.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 427.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 426.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 425.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 421.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 416.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 415.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 414.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 413.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 413.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 410.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 407.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 406.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 406.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 406.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 399.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 397.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 396.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 396.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 393.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 392.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 390.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 390.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 388.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 387.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 384.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 384.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 383.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 381.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 378.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 378.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 377.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 375.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 374.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 372.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 369.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 369.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 367.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 366.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 362.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 362.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 362.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 361.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 359.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 359.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 351.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 347.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 346.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 346.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 344.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 343.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 342.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 337.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 337.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 336.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 334.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 333.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 332.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 331.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 331.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 331.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 330.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 330.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 329.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 328.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 326.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 326.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 324.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 324.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 323.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 322.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 320.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 318.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 318.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 317.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 311.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 310.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 310.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 308.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 308.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 307.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 307.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 306.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 306.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 303.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 302.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 300.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 300.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 298.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 296.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 296.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 295.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 294.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 293.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 292.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 292.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 287.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 284.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 283.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 283.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 282.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 278.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 278.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 278.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 277.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 275.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 273.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 273.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 273.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 271.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 268.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 267.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 266.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 265.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 264.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 263.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 263.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 260.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 259.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 259.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 259.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 255.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 255.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 254.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 252.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 251.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 250.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 247.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 244.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 242.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 241.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 241.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 238.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 237.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 235.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 235.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 234.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 233.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 231.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 230.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 228.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 226.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 225.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 225.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 223.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 223.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 223.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 222.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 220.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 218.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 217.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 216.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 216.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 216.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 215.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 215.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 213.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 212.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 212.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 211.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 206.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 206.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 205.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 204.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 204.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 203.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 202.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 202.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 201.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 199.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 198.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 198.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 198.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 197.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 196.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 196.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 194.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 193.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 192.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 192.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 192.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 192.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 190.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 187.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 186.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 186.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 186.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 183.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 183.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 179.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 178.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 176.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 172.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 171.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 166.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 163.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 160.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 160.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 160.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 160.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 159.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 158.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 157.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 155.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 154.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 153.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 152.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 152.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 148.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 146.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 142.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 142.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 142.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 137.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 137.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 136.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 133.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 132.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 129.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 129.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 127.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 126.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 125.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 123.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 116.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 113.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 108.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 99.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 98.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.1
FF:10164-103B2 76 years, female 69.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.9
Sample C Male 0.6
Sample D Male 0.5

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