We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
METRN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METRN
TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
Tissue methods
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:223.1 nTPM
GTEx:274.7 nTPM
FANTOM5:64.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051164
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.1
Sample id Sample description nTPM
Hippocampus
nTPM: 223.1
2529 Female, age 94, left hemisphere 273.4
1898 Male, age 80, left hemisphere 253.9
2148 Female, age 91, left hemisphere 252.4
1911 Female, age 85, right hemisphere 224.2
2621 Female, age 67, right hemisphere 195.2
1855 Male, age 76, left hemisphere 139.7

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

274.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 274.7
Samples: 255

Max nTPM: 843.3
Min nTPM: 53.3
Std nTPM: 112.2
Median nTPM: 264.9
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 843.3
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 690.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 622.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 602.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 554.9
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 509.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 505.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 497.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 491.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 488.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 486.6
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 481.6
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 477.0
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 476.8
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 476.5
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 457.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 454.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 453.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 445.7
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 445.0
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 444.6
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 443.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 443.0
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 442.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 436.5
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 434.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 425.5
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 422.3
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 420.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 413.3
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 410.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 404.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 401.9
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 401.6
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 399.5
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 397.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 395.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 384.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 381.2
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 376.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 374.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 372.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 367.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 364.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 364.4
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 363.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 362.7
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 361.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 357.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 356.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 352.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 348.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 348.7
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 348.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 348.0
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 345.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 342.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 342.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 340.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 336.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 334.7
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 333.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 332.9
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 332.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 330.0
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 329.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 328.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 328.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 326.5
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 324.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 319.6
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 316.7
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 315.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 311.6
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 311.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 310.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 310.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 307.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 306.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 306.7
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 304.3
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 303.2
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 302.2
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 299.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 297.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 296.4
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 296.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 296.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 295.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 295.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 292.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 290.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 289.8
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 288.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 288.5
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 288.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 287.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 287.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 286.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 285.1
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 285.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 284.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 282.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 281.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 281.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 281.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 280.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 280.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 280.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 279.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 279.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 278.8
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 278.5
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 278.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 277.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 277.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 276.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 275.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 275.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 274.9
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 273.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 272.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 271.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 270.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 270.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 269.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 266.7
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 264.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 262.6
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 260.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 260.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 259.7
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 259.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 258.9
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 258.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 258.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 257.3
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 257.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 256.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 255.7
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 253.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 252.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 252.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 249.0
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 248.5
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 247.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 245.2
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 245.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 244.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 243.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 243.3
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 240.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 239.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 238.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 238.3
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 236.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 236.9
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 235.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 234.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 234.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 234.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 233.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 231.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 227.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 227.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 226.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 223.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 222.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 222.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 222.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 217.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 215.9
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 214.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 214.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 214.5
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 213.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 213.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 212.9
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 209.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 208.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 206.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 205.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 205.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 204.6
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 202.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 202.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 199.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 199.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 199.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 199.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 198.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 195.7
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 193.7
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 193.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 193.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 192.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 189.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 189.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 189.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 188.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 185.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 184.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 182.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 181.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 178.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 177.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 177.7
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 177.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 174.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 173.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 173.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 172.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 171.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 168.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 168.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 165.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 165.2
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 164.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 164.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 163.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 160.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 160.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 160.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 158.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 157.9
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 151.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 149.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 144.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 142.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 138.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 137.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 136.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 133.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 132.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 130.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 127.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 127.1
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 126.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 125.5
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 124.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 122.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 120.6
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 120.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 118.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 118.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 117.0
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 115.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 112.1
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 106.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 101.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 98.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 94.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 86.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 77.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 53.3
Show allShow less

HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.4
FF:10153-102I9 76 years, female 81.1
FF:10169-103B7 60 years, female 47.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo