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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • ECH1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:116.7 nTPM
FANTOM5:136.3 Scaled Tags Per Million
Pig:22.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002907Antibody HPA005835
Glial cells MediumHigh
Neuronal cells Medium-





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 116.7
Samples: 300

Max nTPM: 243.3
Min nTPM: 56.8
Std nTPM: 29.6
Median nTPM: 111.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 243.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 233.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 207.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 200.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 199.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 195.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 194.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 189.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 184.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 181.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 178.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 177.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 176.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 174.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 173.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 172.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 172.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 170.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 167.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 167.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 165.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 164.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 163.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 161.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 161.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 159.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 159.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 158.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 156.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 156.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 155.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 155.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 154.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 154.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 152.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 152.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 152.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 151.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 151.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 150.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 149.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 149.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 149.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 149.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 149.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 147.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 147.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 144.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 144.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 144.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 143.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 141.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 141.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 141.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 141.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 140.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 139.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 139.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 139.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 139.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 139.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 138.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 138.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 137.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 136.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 136.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 136.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 136.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 135.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 134.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 134.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 134.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 134.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 133.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 132.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 131.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 131.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 131.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 131.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 130.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 130.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 130.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 129.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 129.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 129.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 128.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 127.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 127.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 127.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 126.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 126.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 126.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 126.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 125.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 125.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 125.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 123.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 123.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 123.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 123.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 123.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 122.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 122.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 121.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 121.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 121.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 120.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 120.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 120.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 119.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 119.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 119.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 119.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 118.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 118.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 118.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 117.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 117.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 117.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 116.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 116.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 116.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 116.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 116.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 115.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 115.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 115.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 115.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 115.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 114.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 114.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 114.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 114.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 113.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 113.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 113.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 113.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 113.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 113.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 113.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 113.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 113.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 112.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 112.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 112.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 112.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 111.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 111.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 111.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 111.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 111.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 111.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 111.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 110.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 110.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 110.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 110.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 109.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 109.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 108.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 108.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 108.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 108.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 107.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 107.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 107.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 107.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 107.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 107.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 106.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 106.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 106.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 106.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 106.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 106.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 106.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 105.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 105.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 105.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 105.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 104.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 104.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 104.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 104.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 104.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 103.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 103.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 103.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 103.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 103.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 103.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 103.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 103.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 102.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 102.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 102.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 102.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 102.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 101.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 101.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 101.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 101.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 101.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 101.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 101.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 100.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 99.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 99.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 99.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 99.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 98.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 98.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 98.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 98.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 98.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 97.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 97.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 97.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 97.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 96.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 96.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 96.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 95.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 95.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 95.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 95.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 95.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 95.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 94.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 94.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 94.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 94.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 93.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 92.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 92.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 91.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 91.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 91.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 90.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 90.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 90.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 90.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 90.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 90.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 89.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 88.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 88.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 88.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 88.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 88.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 88.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 88.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 88.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 87.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 86.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 86.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 86.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 86.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 85.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 85.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 84.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 84.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 83.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 83.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 83.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 83.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 82.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 82.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 82.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 81.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 81.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 80.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 79.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 78.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 78.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 77.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 76.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 76.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 75.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 74.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 74.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 73.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 72.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 72.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 72.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 72.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 72.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 68.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 68.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 67.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 66.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 64.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 56.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

136.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 136.3
FF:10164-103B2 76 years, female 136.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.2
Pig sample Sample description nTPM
Caudate
nTPM: 22.2
Samples: 4

Max nTPM: 31.9
Min nTPM: 17.1
Sample A Female 17.5
Sample B Female 22.3
Sample C Male 31.9
Sample D Male 17.1

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