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  • TUBB4A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:386.0 nTPM
FANTOM5:499.2 Scaled Tags Per Million
Pig:512.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043640Antibody HPA046280Antibody CAB010768
Glial cells Not detectedLowMedium
Neuronal cells Not detectedLowMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

386.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 386.0
Samples: 300

Max nTPM: 921.3
Min nTPM: 54.4
Std nTPM: 173.1
Median nTPM: 376.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 921.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 810.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 788.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 786.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 784.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 770.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 753.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 743.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 734.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 732.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 723.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 705.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 698.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 689.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 684.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 681.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 673.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 668.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 662.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 659.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 657.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 657.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 654.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 649.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 647.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 638.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 636.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 627.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 625.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 621.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 620.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 616.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 614.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 609.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 606.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 605.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 602.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 601.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 600.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 594.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 587.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 585.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 584.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 583.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 580.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 580.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 573.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 571.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 563.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 562.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 560.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 556.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 555.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 552.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 550.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 550.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 548.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 548.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 540.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 536.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 535.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 535.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 532.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 531.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 527.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 525.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 525.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 525.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 520.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 519.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 513.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 510.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 508.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 508.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 506.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 504.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 504.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 504.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 503.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 502.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 502.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 502.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 501.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 497.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 495.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 495.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 494.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 492.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 487.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 487.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 487.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 484.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 482.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 481.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 479.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 478.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 476.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 469.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 462.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 461.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 455.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 453.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 451.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 451.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 450.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 450.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 449.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 449.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 448.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 445.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 444.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 443.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 438.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 438.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 437.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 436.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 432.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 431.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 429.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 428.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 428.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 424.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 424.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 421.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 421.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 420.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 417.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 417.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 414.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 413.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 411.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 411.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 410.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 409.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 407.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 403.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 402.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 400.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 400.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 399.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 392.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 390.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 386.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 386.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 384.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 382.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 381.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 380.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 379.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 376.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 376.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 376.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 373.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 371.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 371.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 368.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 367.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 367.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 366.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 364.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 361.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 358.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 355.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 353.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 353.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 350.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 349.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 348.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 346.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 345.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 342.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 342.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 338.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 331.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 329.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 329.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 324.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 322.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 322.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 320.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 319.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 318.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 316.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 313.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 313.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 313.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 312.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 312.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 311.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 311.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 309.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 309.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 306.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 303.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 301.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 299.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 295.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 294.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 292.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 289.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 288.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 288.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 286.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 284.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 282.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 278.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 275.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 274.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 273.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 271.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 270.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 270.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 268.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 266.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 265.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 265.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 262.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 259.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 258.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 254.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 252.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 251.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 246.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 243.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 241.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 236.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 235.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 234.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 231.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 230.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 230.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 229.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 229.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 229.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 228.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 228.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 228.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 228.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 227.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 223.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 223.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 221.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 219.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 218.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 217.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 211.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 210.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 209.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 207.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 207.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 204.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 203.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 203.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 197.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 197.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 197.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 190.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 189.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 189.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 189.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 187.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 184.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 182.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 172.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 169.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 168.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 168.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 162.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 158.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 155.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 152.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 148.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 147.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 146.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 146.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 145.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 145.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 141.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 138.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 135.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 134.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 134.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 133.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 129.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 128.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 124.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 120.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 119.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 118.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 116.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 113.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 113.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 112.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 108.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 105.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 104.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 99.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 95.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 95.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 54.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

499.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 499.2
FF:10164-103B2 76 years, female 499.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

512.6
Pig sample Sample description nTPM
Caudate
nTPM: 512.6
Samples: 4

Max nTPM: 540.5
Min nTPM: 468.8
Sample A Female 540.0
Sample B Female 500.9
Sample C Male 540.5
Sample D Male 468.8

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