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CLPTM1
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CLPTM1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:134.3 nTPM
FANTOM5:163.8 Scaled Tags Per Million
Pig:104.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA068767
Glial cells High
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 134.3
Samples: 300

Max nTPM: 256.3
Min nTPM: 50.5
Std nTPM: 34.7
Median nTPM: 130.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 256.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 252.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 230.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 223.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 220.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 214.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 212.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 210.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 207.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 206.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 205.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 204.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 203.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 202.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 197.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 196.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 193.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 191.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 189.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 189.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 188.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 186.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 185.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 183.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 182.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 181.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 181.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 178.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 177.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 177.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 177.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 176.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 176.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 175.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 174.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 173.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 172.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 172.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 172.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 170.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 170.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 170.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 169.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 169.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 168.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 168.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 167.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 166.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 166.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 166.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 165.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 165.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 165.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 165.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 164.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 163.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 162.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 162.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 162.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 162.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 162.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 162.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 161.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 161.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 161.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 161.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 161.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 160.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 159.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 159.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 159.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 159.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 158.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 157.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 157.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 155.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 154.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 154.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 154.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 154.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 153.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 153.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 153.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 153.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 152.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 151.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 151.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 151.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 151.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 151.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 151.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 150.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 150.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 149.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 149.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 148.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 148.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 147.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 147.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 147.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 147.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 147.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 146.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 145.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 145.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 144.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 144.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 144.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 144.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 143.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 143.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 142.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 142.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 142.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 142.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 141.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 141.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 140.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 140.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 140.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 140.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 140.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 139.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 139.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 138.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 138.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 138.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 138.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 138.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 137.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 137.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 137.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 136.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 136.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 135.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 135.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 135.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 135.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 134.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 133.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 133.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 133.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 132.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 132.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 132.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 132.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 131.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 131.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 131.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 130.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 130.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 130.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 130.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 130.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 129.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 129.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 129.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 129.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 128.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 128.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 128.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 128.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 127.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 127.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 127.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 127.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 126.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 126.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 126.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 126.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 126.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 126.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 125.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 125.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 125.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 124.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 124.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 124.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 123.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 123.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 123.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 122.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 122.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 122.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 121.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 121.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 121.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 121.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 121.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 121.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 121.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 120.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 120.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 120.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 120.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 119.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 118.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 118.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 118.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 118.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 118.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 117.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 117.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 117.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 117.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 116.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 115.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 115.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 115.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 115.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 114.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 114.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 114.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 114.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 113.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 113.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 112.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 112.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 112.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 112.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 112.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 112.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 111.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 110.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 110.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 110.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 109.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 108.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 108.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 107.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 107.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 107.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 107.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 106.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 106.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 106.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 106.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 105.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 105.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 105.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 104.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 104.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 104.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 103.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 103.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 102.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 102.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 102.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 100.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 99.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 97.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 97.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 97.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 97.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 96.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 96.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 95.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 95.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 95.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 95.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 94.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 93.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 92.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 92.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 90.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 90.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 90.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 89.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 89.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 89.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 88.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 88.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 87.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 87.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 85.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 85.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 85.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 85.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 84.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 81.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 80.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 78.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 78.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 77.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 74.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 74.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 72.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 71.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 68.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 64.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 62.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 61.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 60.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 56.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 50.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 163.8
FF:10164-103B2 76 years, female 163.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.2
Pig sample Sample description nTPM
Caudate
nTPM: 104.3
Samples: 4

Max nTPM: 128.2
Min nTPM: 79.1
Sample A Female 79.1
Sample B Female 106.7
Sample C Male 128.2
Sample D Male 103.1

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