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OLFM2
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • OLFM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:145.9 nTPM
FANTOM5:73.4 Scaled Tags Per Million
Pig:30.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA057771
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 145.9
Samples: 300

Max nTPM: 475.3
Min nTPM: 30.6
Std nTPM: 79.4
Median nTPM: 129.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 475.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 466.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 443.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 424.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 418.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 398.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 365.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 359.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 350.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 337.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 329.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 303.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 299.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 297.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 289.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 286.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 281.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 274.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 264.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 262.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 260.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 260.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 258.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 257.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 257.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 255.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 254.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 254.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 254.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 253.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 247.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 245.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 245.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 243.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 239.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 239.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 239.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 234.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 233.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 232.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 228.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 228.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 226.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 226.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 225.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 224.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 223.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 219.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 218.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 216.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 216.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 215.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 211.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 210.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 210.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 207.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 207.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 206.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 205.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 203.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 199.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 199.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 198.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 197.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 197.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 196.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 196.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 195.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 190.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 187.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 186.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 185.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 185.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 185.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 185.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 185.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 183.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 183.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 182.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 181.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 181.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 181.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 180.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 179.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 179.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 179.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 179.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 177.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 175.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 175.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 173.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 172.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 171.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 170.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 167.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 167.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 167.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 166.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 166.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 165.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 165.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 165.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 164.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 164.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 163.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 161.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 160.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 157.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 157.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 157.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 155.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 155.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 152.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 152.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 152.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 152.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 152.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 151.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 150.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 148.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 147.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 147.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 146.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 146.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 146.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 146.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 145.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 144.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 143.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 142.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 141.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 140.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 139.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 136.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 136.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 135.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 135.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 134.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 133.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 133.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 133.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 131.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 130.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 130.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 130.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 130.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 129.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 129.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 128.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 128.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 127.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 127.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 125.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 124.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 123.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 123.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 122.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 121.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 120.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 119.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 118.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 118.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 118.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 118.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 118.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 118.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 116.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 116.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 115.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 115.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 115.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 114.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 113.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 112.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 111.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 111.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 111.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 111.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 111.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 111.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 110.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 109.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 108.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 108.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 108.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 108.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 107.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 107.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 107.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 107.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 107.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 106.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 105.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 103.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 103.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 103.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 103.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 102.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 102.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 101.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 101.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 100.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 100.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 98.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 98.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 96.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 95.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 95.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 94.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 94.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 94.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 94.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 94.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 93.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 93.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 93.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 92.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 92.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 92.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 91.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 91.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 90.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 90.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 89.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 88.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 87.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 87.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 87.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 86.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 86.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 85.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 84.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 84.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 81.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 80.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 80.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 79.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 79.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 78.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 78.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 77.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 75.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 75.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 74.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 73.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 72.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 72.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 72.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 71.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 71.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 71.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 71.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 71.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 71.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 71.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 70.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 70.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 69.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 69.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 67.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 66.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 66.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 66.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 66.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 66.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 65.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 64.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 63.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 63.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 61.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 60.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 60.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 57.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 55.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 53.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 53.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 49.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 49.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 48.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 48.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 48.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 47.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 45.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 45.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 45.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 45.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 44.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 42.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 42.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 41.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 40.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 35.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 34.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 30.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.4
FF:10164-103B2 76 years, female 73.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.6
Pig sample Sample description nTPM
Caudate
nTPM: 30.6
Samples: 4

Max nTPM: 35.0
Min nTPM: 25.9
Sample A Female 27.6
Sample B Female 34.0
Sample C Male 35.0
Sample D Male 25.9

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