HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1160.2 nTPM
HPA Brain:428.5 nTPM
GTEx:1160.2 nTPM
FANTOM5:13.6 Scaled Tags Per Million
Pig:586.1 nTPM
Mouse:446.5 nTPM
Allen mouse:6.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 428.5
Sample id Sample description nTPM
Hippocampus
nTPM: 428.5
1898 Male, age 80, left hemisphere 497.2
2529 Female, age 94, left hemisphere 481.6
2621 Female, age 67, right hemisphere 415.5
2148 Female, age 91, left hemisphere 393.8
1911 Female, age 85, right hemisphere 392.9
1855 Male, age 76, left hemisphere 390.1
Dentate gyrus
nTPM: 407.1
2010 Male, age 76, both hemispheres 482.2
2530 Female, age 94, left hemisphere 481.1
2531 Female, age 67, both hemispheres 423.4
2246 Female, age 85, both hemispheres 355.2
1927 Female, age 91, both hemispheres 352.4
2528 Male, age 74, both hemispheres 348.5
Entorhinal gyrus
nTPM: 409.4
2686 Male, age 75, right hemisphere 497.1
2117 Female, age 91, right hemisphere 471.0
1787 Male, age 76, left hemisphere 417.3
2764 Male, age 80, right hemisphere 372.0
1938 Female, age 85, left hemisphere 371.5
2613 Female, age 94, left hemisphere 327.6
Hippocampus, CA1
nTPM: 378.3
2082 Female, age 91, right hemisphere 445.2
2045 Male, age 76, both hemispheres 428.2
1873 Female, age 85, both hemispheres 352.2
2527 Male, age 74, both hemispheres 349.1
2749 Male, age 80, left hemisphere 316.6
Hippocampus, CA2
nTPM: 388.4
1963 Male, age 80, left hemisphere 432.9
2113 Female, age 91, right hemisphere 419.9
2437 Female, age 94, left hemisphere 406.2
1940 Female, age 85, left hemisphere 383.1
1892 Male, age 76, both hemispheres 371.6
2249 Male, age 74, both hemispheres 317.0
Hippocampus, CA3
nTPM: 370.9
2861 Female, age 67, both hemispheres 454.2
1867 Male, age 76, both hemispheres 431.1
1891 Female, age 85, both hemispheres 382.2
2436 Male, age 74, both hemispheres 332.1
2620 Female, age 94, left hemisphere 328.3
2137 Male, age 80, left hemisphere 297.2
Parahippocampal cortex
nTPM: 357.9
2018 Male, age 76, both hemispheres 562.1
2250 Female, age 67, right hemisphere 364.6
1933 Female, age 85, both hemispheres 360.6
1990 Female, age 91, right hemisphere 345.8
2692 Male, age 74, both hemispheres 341.5
2532 Female, age 72, left hemisphere 341.3
2622 Female, age 67, right hemisphere 340.6
2245 Female, age 91, both hemispheres 340.2
1850 Male, age 80, both hemispheres 317.6
2693 Female, age 94, both hemispheres 264.6
Perirhinal gyrus
nTPM: 337.4
1841 Female, age 85, right hemisphere 361.7
1847 Female, age 91, left hemisphere 361.2
1794 Male, age 80, right hemisphere 336.5
2521 Female, age 94, right hemisphere 321.0
2848 Male, age 76, right hemisphere 306.7
Subiculum
nTPM: 400.8
2042 Male, age 76, both hemispheres 567.6
2729 Female, age 91, right hemisphere 416.0
1977 Female, age 85, both hemispheres 380.1
1901 Male, age 80, both hemispheres 372.5
2619 Male, age 74, both hemispheres 357.9
2438 Female, age 94, left hemisphere 310.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 1160.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1160.2
Samples: 255

Max nTPM: 3380.3
Min nTPM: 428.4
Std nTPM: 436.8
Median nTPM: 1080.9
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 3380.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2900.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2625.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2527.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2421.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 2286.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 2269.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2235.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 2171.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 2149.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2086.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.6
FF:10153-102I9 76 years, female 16.9
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 586.1
Pig sample Sample description nTPM
Subiculum
nTPM: 463.8
Samples: 4

Max nTPM: 655.4
Min nTPM: 329.0
Sample A Female 655.4
Sample B Female 469.0
Sample C Male 329.0
Sample D Male 401.6
Dorsal hippocampus
nTPM: 586.1
Samples: 4

Max nTPM: 832.4
Min nTPM: 387.6
Sample A Female 832.4
Sample B Female 541.7
Sample C Male 582.7
Sample D Male 387.6
Entorhinal cortex
nTPM: 470.2
Samples: 4

Max nTPM: 620.7
Min nTPM: 340.8
Sample A Female 419.0
Sample B Female 620.7
Sample C Male 500.4
Sample D Male 340.8
Ventral hippocampus
nTPM: 509.6
Samples: 4

Max nTPM: 547.5
Min nTPM: 452.8
Sample A Female 504.6
Sample B Female 452.8
Sample C Male 533.5
Sample D Male 547.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 446.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 424.2
Samples: 4

Max nTPM: 455.3
Min nTPM: 394.8
Sample A Male 424.2
Sample B Male 422.4
Sample C Female 455.3
Sample D Female 394.8
Hippocampal formation
nTPM: 446.6
Samples: 4

Max nTPM: 509.1
Min nTPM: 409.5
Sample A Male 509.1
Sample B Male 409.5
Sample C Female 418.1
Sample D Female 449.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.6
72081492 Antisense, RP_051017_01_C08, Mouse strain C57BL/6J (56 days, male) 7.2
68633443 Antisense, RP_050125_02_H03, Mouse strain C57BL/6J (56 days, male) 6.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo