We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PIK3R2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PIK3R2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:19.9 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:41.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA069291
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.9
Samples: 300

Max nTPM: 56.1
Min nTPM: 0.0
Std nTPM: 15.1
Median nTPM: 19.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 56.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 55.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 54.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 52.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 51.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 49.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 49.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 49.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 48.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 48.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 47.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 47.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 47.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 47.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 46.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 46.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 46.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 45.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 45.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 44.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 43.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 43.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 43.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 43.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 43.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 42.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 42.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 42.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 41.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 41.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 40.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 40.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 40.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 40.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 40.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 39.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 38.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 38.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 38.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 37.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 37.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 36.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 36.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 36.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 36.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 36.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 36.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 36.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 36.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 35.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 35.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 35.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 35.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 35.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 35.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 35.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 35.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 34.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 34.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 34.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 33.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 33.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 33.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 33.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 33.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 33.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 33.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 33.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 32.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 32.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 32.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 32.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 32.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 31.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 31.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 31.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 31.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 31.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 31.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 31.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 31.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 30.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 30.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 30.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 30.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 29.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 29.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 29.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 29.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 29.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 29.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 28.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 28.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 28.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 28.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 27.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 27.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 27.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 27.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 27.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 26.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 26.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 26.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 26.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 26.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 26.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 26.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 26.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 26.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 26.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 26.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 26.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 25.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 25.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 25.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 24.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 24.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 24.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 24.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 24.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 24.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 23.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 23.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 23.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 23.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 23.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 22.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 22.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 22.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 22.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 21.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 21.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 21.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 21.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 20.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 20.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 20.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 20.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 20.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 19.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 19.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 19.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 19.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 19.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 19.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 19.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 19.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 19.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 19.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 18.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 18.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 18.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 18.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 18.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 18.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 17.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 17.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 17.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 17.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 16.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 16.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 16.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 16.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 16.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 16.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 15.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 15.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 15.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 15.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 15.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 15.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 15.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 14.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 14.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 14.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 14.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 14.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 14.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 14.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 14.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 13.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 13.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 13.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 13.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 13.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 13.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 13.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 12.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 12.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 11.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 11.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 11.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 11.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 11.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 11.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 11.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 10.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 10.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 10.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 10.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 10.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 9.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 9.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 9.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 9.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 8.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 8.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 8.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 7.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 7.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 7.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 7.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 7.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 7.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 7.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 6.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 6.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 6.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 6.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 6.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 6.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 5.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 5.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 5.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 5.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 5.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 4.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 4.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 3.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 3.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 3.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 3.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 2.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 2.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 2.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 2.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 2.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 2.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 2.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 0.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 0.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 0.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 0.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 0.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 0.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 0.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 0.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 0.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 0.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 0.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 0.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 0.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 0.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 0.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 0.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 0.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 0.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 0.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 0.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 0.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 0.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 0.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 0.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 0.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 0.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 0.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 0.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 0.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 0.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 0.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 0.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 0.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 0.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 0.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 0.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 0.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 0.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 0.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 0.0
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.6
FF:10164-103B2 76 years, female 93.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.5
Pig sample Sample description nTPM
Caudate
nTPM: 41.5
Samples: 4

Max nTPM: 51.9
Min nTPM: 33.4
Sample A Female 33.4
Sample B Female 43.0
Sample C Male 51.9
Sample D Male 37.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo