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AP1S1
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • AP1S1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:103.1 nTPM
FANTOM5:59.2 Scaled Tags Per Million
Pig:281.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA060945
Neuronal cells Medium

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 103.1
Samples: 300

Max nTPM: 291.3
Min nTPM: 24.3
Std nTPM: 52.9
Median nTPM: 95.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 291.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 249.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 234.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 234.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 227.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 226.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 218.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 217.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 213.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 212.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 207.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 207.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 203.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 202.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 201.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 198.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 196.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 193.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 193.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 192.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 192.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 191.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 191.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 191.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 190.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 189.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 185.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 182.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 182.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 180.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 179.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 176.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 175.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 174.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 173.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 172.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 171.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 169.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 169.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 169.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 168.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 165.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 164.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 163.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 162.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 162.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 162.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 161.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 160.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 159.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 159.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 157.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 156.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 155.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 155.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 155.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 155.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 151.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 150.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 149.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 149.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 148.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 147.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 145.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 142.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 142.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 141.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 141.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 140.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 140.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 140.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 140.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 138.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 138.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 138.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 138.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 138.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 137.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 136.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 136.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 135.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 135.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 134.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 133.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 133.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 131.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 131.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 130.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 130.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 130.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 130.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 130.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 130.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 129.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 129.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 127.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 126.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 125.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 123.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 123.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 123.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 123.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 121.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 120.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 119.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 118.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 117.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 117.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 116.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 116.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 115.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 115.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 115.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 115.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 115.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 113.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 111.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 111.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 110.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 110.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 110.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 109.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 109.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 108.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 108.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 108.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 106.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 106.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 106.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 106.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 106.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 105.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 104.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 103.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 102.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 101.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 99.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 99.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 99.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 98.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 98.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 97.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 97.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 96.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 96.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 96.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 96.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 95.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 95.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 95.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 93.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 93.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 93.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 92.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 91.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 91.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 91.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 91.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 91.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 90.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 90.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 90.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 90.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 90.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 90.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 89.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 89.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 89.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 88.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 88.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 87.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 86.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 85.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 85.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 84.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 84.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 84.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 84.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 83.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 83.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 83.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 82.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 79.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 79.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 78.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 77.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 77.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 77.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 76.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 75.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 74.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 73.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 73.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 73.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 73.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 73.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 73.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 70.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 70.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 68.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 67.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 67.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 66.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 66.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 65.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 64.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 64.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 64.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 64.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 63.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 63.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 62.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 62.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 62.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 60.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 60.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 60.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 59.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 59.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 59.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 59.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 58.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 58.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 58.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 58.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 57.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 56.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 56.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 55.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 55.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 55.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 55.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 54.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 54.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 53.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 51.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 50.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 50.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 50.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 50.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 49.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 49.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 48.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 48.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 48.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 47.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 46.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 46.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 46.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 45.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 45.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 45.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 45.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 45.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 44.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 44.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 44.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 43.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 43.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 42.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 42.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 42.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 41.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 40.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 40.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 40.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 40.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 40.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 39.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 39.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 38.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 37.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 37.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 37.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 37.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 37.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 37.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 37.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 36.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 35.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 34.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 34.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 34.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 33.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 33.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 33.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 33.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 32.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 32.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 32.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 31.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 30.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 28.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 28.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 27.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 27.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 26.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 24.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.2
FF:10164-103B2 76 years, female 59.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

281.9
Pig sample Sample description nTPM
Caudate
nTPM: 281.9
Samples: 4

Max nTPM: 327.1
Min nTPM: 245.9
Sample A Female 245.9
Sample B Female 298.2
Sample C Male 327.1
Sample D Male 256.4

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