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  • TISSUE

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  • BLOOD

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  • EIF4H
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:180.3 nTPM
FANTOM5:103.8 Scaled Tags Per Million
Pig:185.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA030542
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 180.3
Samples: 300

Max nTPM: 272.8
Min nTPM: 129.3
Std nTPM: 23.5
Median nTPM: 178.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 272.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 262.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 249.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 236.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 235.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 235.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 235.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 235.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 232.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 227.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 225.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 222.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 222.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 222.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 222.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 221.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 219.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 219.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 218.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 217.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 216.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 216.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 216.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 215.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 214.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 214.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 212.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 212.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 212.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 211.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 210.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 210.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 209.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 209.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 208.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 207.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 207.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 207.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 206.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 206.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 206.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 206.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 205.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 205.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 205.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 204.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 204.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 204.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 203.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 203.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 203.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 201.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 201.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 201.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 201.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 201.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 200.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 200.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 200.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 200.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 199.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 199.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 199.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 198.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 197.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 197.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 196.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 196.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 196.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 196.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 196.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 196.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 195.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 195.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 194.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 194.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 193.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 193.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 193.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 193.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 193.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 192.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 192.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 192.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 191.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 191.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 191.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 190.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 190.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 190.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 190.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 190.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 190.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 189.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 189.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 189.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 188.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 188.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 188.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 188.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 187.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 187.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 187.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 187.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 186.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 186.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 186.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 186.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 185.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 185.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 185.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 185.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 184.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 184.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 184.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 183.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 183.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 183.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 183.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 183.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 183.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 182.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 182.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 182.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 181.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 181.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 181.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 181.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 181.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 180.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 180.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 180.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 180.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 180.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 180.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 180.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 180.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 179.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 179.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 179.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 179.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 179.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 179.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 179.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 179.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 178.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 178.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 178.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 178.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 178.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 178.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 177.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 177.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 177.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 177.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 177.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 177.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 176.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 176.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 176.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 176.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 176.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 176.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 176.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 175.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 175.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 175.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 175.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 175.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 175.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 175.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 174.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 174.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 174.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 174.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 173.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 173.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 173.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 173.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 173.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 173.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 172.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 172.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 172.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 172.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 171.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 171.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 171.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 171.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 171.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 171.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 171.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 170.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 170.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 170.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 170.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 170.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 169.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 169.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 169.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 169.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 168.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 168.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 168.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 168.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 168.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 168.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 168.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 167.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 167.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 167.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 167.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 167.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 166.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 166.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 165.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 165.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 165.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 165.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 165.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 165.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 164.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 164.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 164.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 164.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 164.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 164.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 163.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 163.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 163.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 163.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 163.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 163.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 162.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 162.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 161.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 161.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 161.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 160.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 160.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 160.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 160.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 159.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 159.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 159.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 159.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 159.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 159.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 159.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 158.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 157.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 157.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 157.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 157.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 156.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 156.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 156.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 156.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 156.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 155.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 155.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 155.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 155.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 155.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 155.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 154.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 153.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 153.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 153.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 152.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 152.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 152.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 151.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 151.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 150.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 150.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 150.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 150.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 149.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 148.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 148.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 146.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 145.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 144.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 144.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 143.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 143.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 143.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 141.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 139.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 139.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 139.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 136.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 135.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 134.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 133.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 132.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 132.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 130.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 129.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

103.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.8
FF:10164-103B2 76 years, female 103.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.4
Pig sample Sample description nTPM
Caudate
nTPM: 185.4
Samples: 4

Max nTPM: 215.8
Min nTPM: 165.7
Sample A Female 171.3
Sample B Female 188.8
Sample C Male 215.8
Sample D Male 165.7

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