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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • DNM1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:78.1 nTPM
FANTOM5:181.3 Scaled Tags Per Million
Pig:193.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049910Antibody CAB005920
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 78.1
Samples: 300

Max nTPM: 320.9
Min nTPM: 2.4
Std nTPM: 47.1
Median nTPM: 78.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 320.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 290.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 176.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 173.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 171.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 163.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 161.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 158.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 158.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 155.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 153.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 153.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 153.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 152.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 149.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 148.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 147.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 146.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 144.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 144.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 143.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 143.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 142.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 142.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 141.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 139.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 138.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 138.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 138.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 138.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 136.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 136.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 134.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 134.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 133.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 133.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 133.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 132.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 131.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 131.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 130.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 130.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 130.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 129.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 129.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 128.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 128.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 128.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 125.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 125.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 125.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 123.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 123.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 123.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 121.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 120.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 120.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 120.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 118.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 117.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 117.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 117.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 117.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 116.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 115.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 115.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 115.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 114.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 113.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 112.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 112.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 112.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 112.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 110.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 110.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 109.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 108.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 107.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 106.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 106.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 106.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 106.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 106.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 106.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 105.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 105.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 105.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 104.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 104.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 104.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 104.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 104.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 104.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 103.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 103.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 102.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 101.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 101.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 101.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 101.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 100.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 100.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 99.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 99.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 99.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 98.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 98.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 97.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 96.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 96.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 96.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 96.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 96.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 95.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 95.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 95.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 94.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 94.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 93.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 93.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 92.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 92.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 92.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 91.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 91.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 91.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 90.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 90.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 90.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 89.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 89.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 88.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 88.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 85.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 85.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 84.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 84.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 84.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 84.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 84.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 83.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 82.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 82.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 81.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 81.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 81.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 80.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 79.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 79.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 78.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 78.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 78.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 77.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 76.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 75.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 74.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 74.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 74.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 73.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 73.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 72.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 72.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 72.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 72.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 71.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 70.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 69.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 69.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 67.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 66.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 66.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 65.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 65.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 65.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 64.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 64.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 64.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 62.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 61.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 61.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 60.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 60.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 60.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 60.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 59.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 58.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 58.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 55.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 55.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 54.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 53.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 53.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 53.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 53.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 52.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 52.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 52.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 52.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 51.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 49.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 49.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 48.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 47.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 47.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 45.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 44.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 44.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 43.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 43.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 42.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 42.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 42.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 42.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 41.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 40.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 40.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 40.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 40.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 39.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 38.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 37.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 37.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 37.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 37.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 36.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 36.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 35.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 35.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 34.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 34.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 34.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 33.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 32.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 32.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 32.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 31.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 31.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 31.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 30.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 30.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 30.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 30.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 30.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 30.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 30.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 29.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 29.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 28.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 28.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 26.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 25.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 25.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 25.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 24.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 24.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 22.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 21.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 21.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 20.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 20.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 20.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 20.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 19.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 19.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 19.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 19.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 18.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 18.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 18.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 18.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 16.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 16.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 15.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 15.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 15.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 14.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 13.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 13.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 13.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 12.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 12.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 12.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 11.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 11.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 10.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 10.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 9.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 9.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 9.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 6.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 5.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

181.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 181.3
FF:10164-103B2 76 years, female 181.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.9
Pig sample Sample description nTPM
Caudate
nTPM: 193.9
Samples: 4

Max nTPM: 227.3
Min nTPM: 156.3
Sample A Female 156.3
Sample B Female 200.4
Sample C Male 227.3
Sample D Male 191.4

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