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RUNDC3A
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RUNDC3A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:138.9 nTPM
FANTOM5:96.9 Scaled Tags Per Million
Pig:157.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA023548Antibody HPA070733
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.9
Samples: 300

Max nTPM: 373.9
Min nTPM: 10.5
Std nTPM: 58.8
Median nTPM: 139.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 373.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 300.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 288.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 275.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 257.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 251.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 251.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 244.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 243.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 239.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 238.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 235.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 234.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 233.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 233.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 233.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 232.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 232.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 231.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 231.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 230.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 228.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 226.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 224.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 222.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 221.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 220.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 219.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 219.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 218.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 218.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 218.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 218.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 215.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 214.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 213.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 210.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 209.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 208.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 207.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 207.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 206.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 206.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 205.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 204.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 204.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 204.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 203.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 203.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 202.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 200.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 199.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 197.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 196.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 195.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 194.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 193.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 193.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 192.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 192.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 191.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 188.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 185.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 185.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 185.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 184.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 183.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 182.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 180.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 179.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 179.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 178.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 178.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 177.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 177.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 175.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 175.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 175.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 175.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 175.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 174.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 174.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 174.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 173.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 172.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 172.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 172.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 171.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 170.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 169.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 168.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 168.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 168.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 166.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 166.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 166.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 165.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 165.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 164.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 163.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 163.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 163.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 161.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 160.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 159.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 158.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 158.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 158.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 157.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 157.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 157.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 157.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 157.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 156.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 156.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 156.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 155.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 155.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 154.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 154.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 154.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 154.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 153.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 152.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 152.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 152.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 151.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 151.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 151.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 151.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 151.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 149.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 149.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 148.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 147.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 147.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 147.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 146.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 146.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 145.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 144.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 144.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 143.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 142.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 141.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 141.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 140.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 140.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 140.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 139.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 139.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 137.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 136.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 135.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 135.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 135.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 134.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 134.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 133.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 133.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 133.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 132.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 132.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 132.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 131.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 130.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 130.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 129.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 129.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 129.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 128.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 127.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 127.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 127.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 127.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 127.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 125.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 125.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 125.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 124.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 123.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 122.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 122.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 121.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 120.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 120.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 119.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 119.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 118.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 116.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 114.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 114.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 114.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 112.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 111.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 110.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 110.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 110.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 109.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 109.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 108.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 107.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 107.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 105.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 104.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 104.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 103.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 103.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 103.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 102.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 102.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 101.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 101.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 101.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 100.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 100.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 100.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 99.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 99.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 98.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 98.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 98.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 97.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 96.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 93.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 92.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 91.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 90.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 89.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 89.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 89.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 88.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 85.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 85.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 85.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 84.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 84.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 84.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 82.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 82.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 81.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 81.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 81.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 79.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 78.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 76.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 74.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 73.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 73.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 73.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 72.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 71.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 71.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 71.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 70.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 70.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 69.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 69.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 68.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 68.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 68.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 67.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 67.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 66.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 66.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 66.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 64.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 64.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 63.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 61.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 60.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 59.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 59.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 59.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 59.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 58.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 58.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 54.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 54.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 54.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 53.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 53.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 50.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 48.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 47.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 47.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 44.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 44.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 43.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 43.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 42.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 41.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 39.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 34.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 31.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 30.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 29.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 18.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 10.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 96.9
FF:10164-103B2 76 years, female 96.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.3
Pig sample Sample description nTPM
Caudate
nTPM: 157.3
Samples: 4

Max nTPM: 193.5
Min nTPM: 122.6
Sample A Female 122.6
Sample B Female 167.6
Sample C Male 193.5
Sample D Male 145.6

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