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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:44.1 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:41.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA024592
Glial cells Medium
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.1
Samples: 300

Max nTPM: 152.6
Min nTPM: 10.8
Std nTPM: 17.4
Median nTPM: 40.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 152.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 102.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 100.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 97.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 96.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 88.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 86.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 84.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 83.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 83.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 81.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 80.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 80.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 79.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 77.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 75.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 74.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 74.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 74.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 74.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 73.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 73.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 71.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 71.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 70.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 70.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 70.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 69.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 69.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 68.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 68.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 68.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 67.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 67.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 67.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 66.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 65.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 64.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 64.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 64.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 62.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 62.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 61.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 59.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 59.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 59.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 58.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 58.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 58.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 58.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 57.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 57.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 57.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 56.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 56.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 56.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 56.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 56.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 55.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 54.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 54.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 54.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 54.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 54.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 54.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 54.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 53.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 53.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 53.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 53.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 53.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 53.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 52.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 52.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 52.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 51.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 51.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 51.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 51.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 50.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 50.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 50.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 50.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 50.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 50.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 49.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 49.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 49.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 49.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 49.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 49.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 49.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 48.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 48.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 48.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 48.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 48.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 47.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 47.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 47.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 47.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 47.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 47.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 46.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 46.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 46.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 46.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 46.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 45.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 45.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 45.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 45.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 45.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 45.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 45.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 44.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 44.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 44.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 44.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 44.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 44.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 43.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 43.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 43.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 43.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 42.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 42.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 42.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 42.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 42.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 42.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 42.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 42.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 41.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 41.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 41.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 41.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 41.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 41.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 41.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 40.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 40.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 40.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 40.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 40.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 40.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 40.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 40.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 40.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 40.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 39.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 39.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 39.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 39.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 39.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 39.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 38.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 38.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 38.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 38.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 38.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 38.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 38.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 38.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 38.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 38.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 38.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 38.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 38.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 37.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 37.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 37.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 37.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 37.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 37.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 37.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 36.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 36.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 36.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 36.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 36.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 36.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 36.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 36.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 36.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 36.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 36.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 36.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 36.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 35.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 35.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 35.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 35.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 35.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 35.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 35.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 35.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 35.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 34.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 34.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 34.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 34.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 34.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 34.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 34.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 34.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 34.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 34.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 34.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 34.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 33.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 33.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 33.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 33.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 33.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 33.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 33.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 33.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 33.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 33.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 33.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 33.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 33.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 32.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 32.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 32.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 32.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 32.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 32.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 32.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 32.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 32.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 31.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 31.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 31.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 31.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 31.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 31.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 31.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 31.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 31.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 30.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 30.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 30.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 30.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 29.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 29.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 29.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 29.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 29.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 28.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 28.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 28.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 28.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 28.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 28.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 28.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 28.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 28.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 27.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 27.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 27.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 27.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 27.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 27.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 26.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 26.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 26.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 26.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 26.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 26.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 26.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 26.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 25.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 25.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 25.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 25.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 24.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 24.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 24.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 23.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 23.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 22.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 22.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 22.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 22.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 22.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 21.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 20.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 20.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 20.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 19.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 19.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 18.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 15.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 11.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 10.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.6
FF:10164-103B2 76 years, female 93.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.7
Pig sample Sample description nTPM
Caudate
nTPM: 41.7
Samples: 4

Max nTPM: 45.9
Min nTPM: 39.3
Sample A Female 40.1
Sample B Female 41.5
Sample C Male 45.9
Sample D Male 39.3

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