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MRPL27
HPA
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  • SUMMARY

  • TISSUE

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  • MRPL27
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:82.9 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:13.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA021416
Glial cells Not detected
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 82.9
Samples: 300

Max nTPM: 195.2
Min nTPM: 39.2
Std nTPM: 22.3
Median nTPM: 80.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 195.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 179.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 170.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 159.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 158.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 151.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 143.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 135.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 130.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 128.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 128.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 128.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 126.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 126.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 124.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 123.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 122.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 121.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 119.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 117.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 116.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 116.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 115.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 113.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 112.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 112.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 111.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 109.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 108.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 106.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 106.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 105.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 105.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 104.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 104.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 104.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 103.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 103.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 102.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 102.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 102.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 102.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 101.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 100.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 100.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 100.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 100.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 100.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 100.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 99.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 99.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 99.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 98.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 98.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 98.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 98.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 97.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 97.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 97.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 96.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 96.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 96.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 96.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 95.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 95.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 95.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 95.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 95.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 94.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 94.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 94.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 94.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 94.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 94.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 94.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 94.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 93.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 93.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 93.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 92.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 92.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 91.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 91.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 91.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 91.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 91.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 90.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 90.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 90.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 90.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 90.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 89.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 89.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 89.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 89.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 88.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 88.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 88.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 88.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 88.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 87.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 87.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 87.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 87.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 87.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 87.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 86.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 86.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 86.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 86.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 86.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 85.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 85.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 85.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 85.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 85.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 85.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 84.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 84.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 84.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 84.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 84.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 84.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 84.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 84.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 83.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 83.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 83.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 83.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 83.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 83.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 82.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 82.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 82.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 82.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 82.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 82.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 82.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 82.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 82.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 82.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 82.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 82.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 81.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 81.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 81.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 81.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 81.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 80.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 80.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 80.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 80.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 80.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 80.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 79.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 79.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 79.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 79.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 78.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 78.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 78.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 78.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 78.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 78.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 77.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 77.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 77.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 77.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 77.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 77.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 76.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 76.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 76.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 76.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 76.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 76.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 76.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 76.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 75.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 75.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 75.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 75.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 75.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 75.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 75.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 75.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 74.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 74.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 74.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 74.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 73.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 73.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 73.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 73.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 73.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 73.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 72.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 72.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 72.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 72.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 71.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 71.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 71.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 71.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 71.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 71.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 71.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 70.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 70.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 70.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 70.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 70.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 70.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 69.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 69.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 69.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 69.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 69.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 69.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 69.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 69.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 69.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 69.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 68.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 68.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 68.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 68.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 68.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 68.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 67.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 67.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 66.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 66.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 66.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 66.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 66.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 66.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 65.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 65.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 65.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 65.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 64.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 64.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 64.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 64.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 64.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 64.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 64.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 64.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 64.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 64.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 63.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 63.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 63.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 63.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 62.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 62.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 62.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 62.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 62.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 61.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 61.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 60.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 60.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 60.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 60.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 59.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 59.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 58.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 58.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 58.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 57.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 56.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 56.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 55.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 55.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 55.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 55.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 55.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 54.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 54.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 52.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 52.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 51.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 50.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 49.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 48.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 48.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 48.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 48.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 47.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 45.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 44.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 43.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 41.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 41.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 39.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.0
FF:10164-103B2 76 years, female 48.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.1
Pig sample Sample description nTPM
Caudate
nTPM: 13.1
Samples: 4

Max nTPM: 13.8
Min nTPM: 12.0
Sample A Female 13.3
Sample B Female 13.3
Sample C Male 12.0
Sample D Male 13.8

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