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SLC9A3R1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC9A3R1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:97.1 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:22.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA009672Antibody HPA027247Antibody CAB001962
Glial cells LowNot detectedNot detected
Neuronal cells Not detectedNot detectedHigh







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 97.1
Samples: 300

Max nTPM: 278.3
Min nTPM: 24.6
Std nTPM: 48.2
Median nTPM: 86.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 278.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 276.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 261.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 259.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 254.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 236.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 231.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 230.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 218.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 217.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 201.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 201.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 200.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 195.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 191.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 188.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 186.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 179.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 178.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 177.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 176.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 174.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 174.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 170.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 169.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 169.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 168.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 167.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 167.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 165.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 165.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 161.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 161.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 159.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 157.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 156.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 154.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 153.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 153.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 150.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 150.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 149.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 148.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 148.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 147.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 147.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 146.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 146.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 146.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 143.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 143.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 142.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 141.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 138.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 138.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 136.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 136.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 134.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 133.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 133.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 132.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 131.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 131.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 130.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 125.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 125.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 125.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 124.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 123.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 123.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 122.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 122.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 121.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 119.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 119.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 119.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 119.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 117.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 117.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 116.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 116.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 116.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 114.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 114.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 114.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 113.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 112.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 112.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 112.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 111.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 111.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 111.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 110.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 110.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 109.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 109.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 107.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 106.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 106.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 106.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 105.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 105.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 105.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 105.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 104.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 104.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 103.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 103.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 102.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 102.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 101.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 101.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 101.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 101.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 101.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 101.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 100.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 100.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 99.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 99.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 99.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 98.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 98.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 97.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 96.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 96.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 96.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 96.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 95.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 95.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 94.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 93.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 91.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 91.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 90.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 90.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 90.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 90.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 89.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 88.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 88.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 87.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 87.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 87.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 86.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 86.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 86.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 86.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 86.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 86.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 86.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 85.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 84.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 84.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 84.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 84.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 83.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 83.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 82.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 82.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 82.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 81.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 81.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 81.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 81.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 81.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 80.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 79.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 79.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 78.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 77.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 77.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 77.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 76.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 76.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 76.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 76.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 76.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 76.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 75.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 75.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 74.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 74.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 74.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 73.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 72.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 72.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 71.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 71.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 71.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 70.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 70.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 70.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 70.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 70.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 69.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 68.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 68.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 68.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 67.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 67.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 67.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 66.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 65.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 65.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 65.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 65.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 65.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 65.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 64.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 64.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 64.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 64.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 64.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 64.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 64.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 63.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 63.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 62.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 62.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 62.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 62.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 61.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 61.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 61.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 61.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 60.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 60.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 59.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 58.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 58.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 57.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 57.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 57.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 57.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 57.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 56.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 56.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 56.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 56.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 56.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 56.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 55.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 55.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 55.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 55.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 55.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 54.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 54.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 54.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 54.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 53.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 53.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 53.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 52.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 52.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 51.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 51.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 50.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 50.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 50.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 50.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 50.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 50.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 49.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 49.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 49.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 49.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 49.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 49.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 48.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 48.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 48.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 48.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 48.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 48.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 47.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 47.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 47.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 44.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 43.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 43.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 43.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 42.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 41.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 39.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 38.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 38.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 37.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 37.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 34.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 32.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 31.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 28.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 27.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 27.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 27.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 25.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 24.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.3
FF:10164-103B2 76 years, female 38.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.6
Pig sample Sample description nTPM
Caudate
nTPM: 22.6
Samples: 4

Max nTPM: 28.6
Min nTPM: 19.9
Sample A Female 21.1
Sample B Female 20.9
Sample C Male 28.6
Sample D Male 19.9

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