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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

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  • CPE
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1047.2 nTPM
FANTOM5:1682.6 Scaled Tags Per Million
Pig:404.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003819Antibody CAB024907Antibody CAB080183
Glial cells Not detectedNot detectedNot detected
Neuronal cells LowNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1047.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1047.2
Samples: 300

Max nTPM: 2413.3
Min nTPM: 178.2
Std nTPM: 369.9
Median nTPM: 1025.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2413.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2238.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2038.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1943.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1943.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1942.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1932.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1932.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1900.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1893.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1886.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1815.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1783.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1756.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1729.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1729.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1683.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1669.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1667.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1665.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1662.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1642.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1619.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1616.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1615.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1602.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1579.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1566.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1545.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1520.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1515.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1510.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1489.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1474.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1474.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1471.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1455.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1416.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1412.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1411.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1405.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1394.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1393.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1388.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1381.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1380.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1378.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1377.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1375.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1365.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1365.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1358.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1357.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1352.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1352.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1345.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1344.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1337.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1336.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1330.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1330.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1327.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1323.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1312.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1311.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1298.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1294.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1287.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1284.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1279.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1278.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1274.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1248.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1240.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1235.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1235.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1235.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1234.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1233.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1233.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1228.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1224.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1219.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1216.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1209.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1209.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1202.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1200.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1198.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1195.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1189.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1187.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1178.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1176.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1174.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1171.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1169.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1164.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1161.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1160.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1158.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1156.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1152.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1150.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1149.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1149.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1147.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1146.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1139.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1138.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1137.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1137.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1137.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1133.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1133.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1125.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1125.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1124.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1123.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1122.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1109.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1101.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1099.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1098.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1098.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1098.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1091.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1086.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1082.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1082.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1080.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1073.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1070.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1066.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1066.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1064.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1062.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1059.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1055.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1052.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1048.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1045.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1043.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1042.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1041.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1041.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1041.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1028.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1028.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1028.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1022.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1019.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1018.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1016.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1015.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1013.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1011.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1010.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1007.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 996.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 996.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 995.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 993.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 991.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 991.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 989.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 985.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 983.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 979.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 978.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 974.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 973.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 971.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 968.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 959.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 952.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 948.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 946.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 946.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 944.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 939.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 936.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 934.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 931.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 930.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 928.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 926.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 922.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 921.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 918.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 915.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 914.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 909.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 909.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 906.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 905.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 901.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 897.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 896.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 896.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 894.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 893.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 891.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 888.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 884.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 883.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 883.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 883.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 880.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 876.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 876.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 870.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 867.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 849.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 839.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 829.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 828.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 825.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 815.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 809.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 809.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 803.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 801.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 797.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 793.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 792.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 792.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 790.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 788.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 785.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 782.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 779.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 776.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 773.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 770.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 762.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 757.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 757.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 757.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 749.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 738.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 738.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 737.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 735.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 724.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 719.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 702.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 696.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 691.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 686.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 683.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 677.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 675.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 668.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 668.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 661.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 658.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 657.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 653.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 651.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 645.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 640.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 635.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 633.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 629.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 627.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 621.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 619.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 618.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 614.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 607.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 605.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 600.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 600.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 598.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 590.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 590.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 582.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 580.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 554.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 551.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 545.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 520.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 518.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 502.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 484.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 460.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 458.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 449.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 411.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 365.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 363.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 332.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 294.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 291.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 285.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 262.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 241.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 182.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 178.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1682.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1682.6
FF:10164-103B2 76 years, female 1682.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

404.2
Pig sample Sample description nTPM
Caudate
nTPM: 404.2
Samples: 4

Max nTPM: 497.0
Min nTPM: 355.8
Sample A Female 355.8
Sample B Female 405.8
Sample C Male 497.0
Sample D Male 358.0

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