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EIF4G2
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • EIF4G2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:157.0 nTPM
FANTOM5:777.3 Scaled Tags Per Million
Pig:290.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006773Antibody HPA016965Antibody CAB005163
Glial cells MediumLowMedium
Neuronal cells -MediumMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 157.0
Samples: 300

Max nTPM: 275.4
Min nTPM: 80.8
Std nTPM: 26.2
Median nTPM: 154.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 275.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 262.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 252.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 236.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 227.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 226.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 226.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 219.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 215.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 215.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 212.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 210.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 209.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 208.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 207.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 206.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 204.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 202.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 201.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 200.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 197.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 195.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 194.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 193.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 190.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 190.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 190.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 189.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 189.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 188.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 188.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 187.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 187.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 186.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 186.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 185.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 185.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 185.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 185.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 185.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 184.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 184.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 182.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 182.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 182.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 181.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 181.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 181.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 180.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 178.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 177.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 177.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 176.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 176.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 176.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 175.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 174.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 174.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 173.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 173.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 172.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 172.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 172.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 171.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 171.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 170.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 170.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 170.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 170.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 170.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 169.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 168.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 168.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 168.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 168.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 168.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 167.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 167.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 167.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 167.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 166.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 166.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 166.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 165.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 165.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 165.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 164.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 164.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 164.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 164.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 164.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 164.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 163.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 163.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 163.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 163.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 162.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 162.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 162.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 162.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 162.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 162.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 162.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 161.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 161.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 161.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 161.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 161.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 160.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 160.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 160.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 160.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 160.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 160.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 160.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 159.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 159.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 159.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 159.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 159.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 159.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 159.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 159.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 159.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 158.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 158.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 158.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 158.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 158.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 158.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 158.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 158.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 157.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 157.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 157.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 157.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 157.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 157.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 157.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 156.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 156.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 156.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 156.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 156.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 155.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 155.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 155.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 155.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 154.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 154.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 154.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 154.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 154.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 154.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 154.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 153.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 153.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 153.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 153.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 153.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 153.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 153.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 153.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 153.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 152.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 152.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 152.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 152.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 152.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 151.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 151.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 150.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 150.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 150.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 150.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 150.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 150.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 150.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 150.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 149.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 149.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 149.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 148.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 148.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 148.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 148.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 147.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 147.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 147.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 147.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 147.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 147.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 146.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 146.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 146.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 146.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 146.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 145.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 145.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 145.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 144.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 144.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 144.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 144.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 144.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 144.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 143.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 143.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 143.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 142.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 142.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 142.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 142.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 141.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 141.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 141.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 141.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 141.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 141.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 140.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 140.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 140.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 140.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 140.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 140.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 140.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 140.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 139.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 139.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 139.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 139.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 139.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 139.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 138.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 138.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 138.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 138.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 138.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 137.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 137.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 137.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 137.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 136.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 136.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 136.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 136.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 136.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 136.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 135.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 135.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 134.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 134.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 133.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 133.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 133.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 132.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 131.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 130.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 130.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 130.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 130.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 130.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 130.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 130.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 129.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 129.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 128.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 128.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 127.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 127.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 127.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 126.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 126.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 126.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 124.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 124.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 124.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 123.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 123.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 122.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 122.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 120.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 118.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 118.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 116.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 116.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 116.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 115.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 113.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 113.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 112.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 109.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 106.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 105.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 100.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 97.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 80.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

777.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 777.3
FF:10164-103B2 76 years, female 777.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

290.3
Pig sample Sample description nTPM
Caudate
nTPM: 290.3
Samples: 4

Max nTPM: 312.8
Min nTPM: 276.5
Sample A Female 295.0
Sample B Female 276.9
Sample C Male 312.8
Sample D Male 276.5

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