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RPS13
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS13
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:589.2 nTPM
FANTOM5:136.5 Scaled Tags Per Million
Pig:147.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA005985
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

589.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 589.2
Samples: 300

Max nTPM: 1758.0
Min nTPM: 319.8
Std nTPM: 180.2
Median nTPM: 550.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1758.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1602.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1318.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1225.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1202.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1169.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1116.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1080.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1045.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 953.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 945.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 909.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 907.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 901.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 886.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 860.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 854.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 847.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 827.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 826.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 821.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 814.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 805.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 803.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 796.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 795.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 795.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 780.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 780.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 779.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 772.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 767.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 765.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 764.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 760.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 756.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 750.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 748.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 747.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 742.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 734.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 732.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 731.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 731.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 731.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 731.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 727.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 727.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 725.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 725.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 725.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 715.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 713.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 713.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 708.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 708.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 707.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 704.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 703.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 703.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 700.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 699.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 695.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 692.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 691.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 687.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 680.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 679.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 678.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 678.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 677.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 667.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 667.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 665.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 665.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 664.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 664.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 660.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 660.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 659.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 658.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 657.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 657.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 657.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 655.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 655.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 652.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 651.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 650.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 649.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 647.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 646.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 639.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 637.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 636.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 635.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 633.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 628.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 627.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 626.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 625.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 623.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 623.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 619.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 612.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 611.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 611.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 607.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 607.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 607.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 602.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 601.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 599.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 598.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 597.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 596.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 595.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 593.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 592.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 591.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 590.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 585.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 585.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 585.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 584.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 581.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 581.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 580.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 579.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 577.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 576.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 574.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 574.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 569.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 569.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 565.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 564.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 564.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 564.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 562.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 562.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 559.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 559.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 558.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 556.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 555.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 555.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 555.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 551.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 551.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 548.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 547.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 546.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 545.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 544.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 544.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 544.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 543.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 543.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 540.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 538.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 537.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 537.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 537.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 536.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 536.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 532.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 529.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 528.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 526.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 526.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 524.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 522.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 520.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 519.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 518.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 517.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 515.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 515.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 514.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 512.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 512.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 512.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 511.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 510.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 508.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 507.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 506.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 506.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 506.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 504.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 501.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 500.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 500.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 498.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 498.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 497.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 495.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 495.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 494.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 494.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 493.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 493.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 493.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 493.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 493.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 491.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 491.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 490.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 490.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 490.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 487.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 485.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 485.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 483.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 483.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 483.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 482.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 482.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 481.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 480.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 478.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 478.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 476.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 476.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 476.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 475.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 474.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 472.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 472.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 471.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 471.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 470.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 469.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 465.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 464.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 460.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 459.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 458.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 457.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 456.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 453.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 453.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 451.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 451.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 450.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 450.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 450.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 448.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 448.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 447.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 446.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 444.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 440.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 440.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 438.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 437.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 437.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 436.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 436.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 432.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 432.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 430.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 428.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 428.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 427.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 425.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 423.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 423.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 421.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 417.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 417.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 413.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 411.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 406.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 405.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 405.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 404.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 398.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 397.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 395.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 394.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 389.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 388.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 387.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 387.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 387.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 386.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 383.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 374.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 374.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 366.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 365.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 364.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 360.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 358.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 355.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 354.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 323.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 319.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

136.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 136.5
FF:10164-103B2 76 years, female 136.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.0
Pig sample Sample description nTPM
Caudate
nTPM: 147.0
Samples: 4

Max nTPM: 194.5
Min nTPM: 116.5
Sample A Female 116.5
Sample B Female 140.4
Sample C Male 194.5
Sample D Male 136.6

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