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NDUFS8
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • NDUFS8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:181.1 nTPM
FANTOM5:139.3 Scaled Tags Per Million
Pig:98.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018524Antibody HPA067429
Glial cells LowLow
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 181.1
Samples: 300

Max nTPM: 360.1
Min nTPM: 65.4
Std nTPM: 52.4
Median nTPM: 175.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 360.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 357.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 347.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 330.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 326.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 316.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 315.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 312.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 312.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 295.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 285.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 283.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 277.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 277.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 274.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 271.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 269.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 269.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 268.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 268.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 266.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 262.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 261.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 260.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 260.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 257.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 256.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 255.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 254.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 251.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 251.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 249.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 248.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 248.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 247.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 244.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 244.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 243.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 243.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 243.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 243.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 243.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 241.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 239.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 239.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 237.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 236.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 235.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 233.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 231.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 230.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 229.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 229.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 227.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 226.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 225.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 224.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 223.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 223.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 223.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 222.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 222.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 220.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 220.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 218.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 216.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 215.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 214.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 214.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 213.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 213.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 212.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 210.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 210.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 210.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 209.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 208.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 204.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 204.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 204.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 203.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 202.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 202.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 202.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 202.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 201.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 201.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 201.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 201.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 200.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 200.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 200.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 199.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 198.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 198.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 198.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 197.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 197.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 197.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 197.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 196.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 195.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 195.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 195.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 195.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 194.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 193.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 192.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 192.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 192.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 192.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 190.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 189.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 189.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 189.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 189.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 188.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 188.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 188.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 187.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 186.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 185.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 185.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 185.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 185.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 185.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 184.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 184.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 183.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 182.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 182.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 182.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 181.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 180.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 180.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 179.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 179.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 179.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 178.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 178.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 178.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 178.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 177.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 177.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 177.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 176.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 176.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 176.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 176.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 175.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 175.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 174.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 174.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 174.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 174.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 174.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 173.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 173.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 173.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 172.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 172.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 172.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 172.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 171.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 170.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 170.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 169.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 168.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 168.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 167.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 167.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 166.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 166.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 166.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 166.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 164.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 164.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 163.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 163.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 163.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 161.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 161.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 161.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 161.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 160.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 159.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 159.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 159.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 158.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 158.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 158.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 157.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 157.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 156.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 155.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 155.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 155.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 155.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 155.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 155.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 155.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 154.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 154.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 154.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 153.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 152.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 151.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 151.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 150.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 150.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 150.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 149.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 149.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 148.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 148.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 148.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 147.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 147.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 147.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 146.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 146.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 145.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 145.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 145.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 145.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 145.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 143.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 143.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 142.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 141.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 140.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 140.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 140.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 140.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 139.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 139.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 139.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 139.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 138.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 138.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 137.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 137.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 136.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 136.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 135.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 135.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 134.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 134.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 133.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 132.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 131.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 131.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 130.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 128.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 126.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 126.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 126.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 125.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 125.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 125.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 125.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 124.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 124.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 123.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 122.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 122.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 122.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 120.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 119.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 118.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 117.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 117.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 116.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 116.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 116.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 114.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 112.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 110.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 110.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 107.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 106.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 104.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 104.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 102.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 102.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 101.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 100.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 99.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 98.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 98.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 94.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 92.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 91.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 91.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 86.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 65.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 139.3
FF:10164-103B2 76 years, female 139.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.5
Pig sample Sample description nTPM
Caudate
nTPM: 98.5
Samples: 4

Max nTPM: 113.1
Min nTPM: 84.0
Sample A Female 84.0
Sample B Female 110.5
Sample C Male 113.1
Sample D Male 86.3

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