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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PTPN5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:230.2 nTPM
FANTOM5:343.3 Scaled Tags Per Million
Pig:80.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA031014
Glial cells Not detected
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 230.2
Samples: 300

Max nTPM: 568.0
Min nTPM: 1.5
Std nTPM: 137.3
Median nTPM: 214.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 568.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 567.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 566.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 536.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 495.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 493.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 482.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 479.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 476.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 471.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 471.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 465.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 465.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 462.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 455.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 453.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 451.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 446.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 443.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 442.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 436.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 436.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 435.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 433.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 431.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 429.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 429.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 428.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 427.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 426.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 423.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 422.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 421.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 419.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 418.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 417.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 416.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 416.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 415.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 415.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 411.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 400.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 398.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 395.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 392.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 390.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 387.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 387.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 386.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 383.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 383.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 382.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 379.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 378.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 377.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 376.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 375.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 373.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 373.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 372.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 369.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 368.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 364.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 362.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 360.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 360.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 359.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 356.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 356.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 355.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 351.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 347.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 346.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 345.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 345.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 343.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 342.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 342.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 338.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 334.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 334.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 330.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 327.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 326.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 326.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 326.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 325.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 319.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 317.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 316.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 315.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 315.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 311.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 308.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 307.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 305.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 304.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 301.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 296.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 296.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 296.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 294.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 293.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 293.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 292.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 291.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 290.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 290.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 286.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 286.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 276.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 276.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 275.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 275.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 273.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 272.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 272.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 272.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 270.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 267.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 266.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 265.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 265.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 264.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 263.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 260.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 259.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 258.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 254.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 247.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 242.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 242.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 239.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 238.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 237.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 236.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 236.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 232.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 231.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 227.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 227.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 227.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 227.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 225.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 223.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 223.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 222.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 216.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 216.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 214.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 213.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 213.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 213.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 212.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 212.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 211.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 211.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 210.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 210.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 208.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 207.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 207.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 200.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 198.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 196.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 195.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 195.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 192.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 190.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 187.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 184.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 183.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 183.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 182.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 180.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 177.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 177.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 175.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 172.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 170.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 166.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 165.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 165.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 164.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 164.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 164.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 162.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 161.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 161.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 160.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 159.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 158.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 154.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 153.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 153.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 151.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 150.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 149.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 144.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 144.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 144.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 142.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 141.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 140.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 138.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 138.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 137.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 135.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 131.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 126.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 123.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 123.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 122.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 122.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 120.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 120.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 119.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 119.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 118.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 117.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 117.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 113.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 112.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 111.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 109.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 107.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 106.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 105.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 105.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 104.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 103.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 103.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 102.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 99.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 95.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 94.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 90.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 90.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 90.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 89.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 88.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 87.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 84.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 84.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 83.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 83.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 81.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 81.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 79.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 78.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 77.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 76.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 75.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 73.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 73.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 72.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 72.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 71.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 70.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 69.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 67.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 64.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 60.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 59.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 59.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 58.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 57.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 55.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 54.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 52.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 49.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 48.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 48.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 46.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 45.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 44.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 43.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 40.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 39.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 37.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 36.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 35.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 35.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 30.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 25.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 24.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 22.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 17.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 16.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 13.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 13.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 10.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 9.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 6.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

343.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 343.3
FF:10164-103B2 76 years, female 343.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.2
Pig sample Sample description nTPM
Caudate
nTPM: 80.2
Samples: 4

Max nTPM: 96.1
Min nTPM: 52.5
Sample A Female 52.5
Sample B Female 86.7
Sample C Male 96.1
Sample D Male 85.5

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