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ALDH2
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ALDH2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:149.2 nTPM
FANTOM5:377.2 Scaled Tags Per Million
Pig:20.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051065
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 149.2
Samples: 300

Max nTPM: 345.6
Min nTPM: 33.8
Std nTPM: 55.5
Median nTPM: 139.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 345.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 324.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 319.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 317.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 308.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 306.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 299.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 299.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 296.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 281.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 261.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 259.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 256.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 253.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 252.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 251.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 247.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 247.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 245.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 239.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 238.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 234.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 233.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 231.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 230.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 229.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 226.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 225.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 223.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 223.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 222.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 222.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 219.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 217.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 216.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 216.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 215.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 214.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 213.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 207.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 206.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 204.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 203.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 201.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 200.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 199.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 199.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 198.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 198.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 197.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 197.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 196.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 195.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 195.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 195.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 195.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 194.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 194.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 193.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 193.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 192.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 192.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 190.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 190.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 190.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 189.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 189.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 188.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 187.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 187.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 186.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 186.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 185.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 184.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 183.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 182.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 182.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 181.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 181.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 180.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 179.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 179.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 179.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 178.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 177.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 176.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 175.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 173.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 173.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 172.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 172.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 171.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 170.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 169.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 169.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 169.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 168.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 167.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 167.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 163.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 161.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 161.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 161.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 161.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 160.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 160.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 159.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 156.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 155.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 155.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 155.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 155.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 155.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 155.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 154.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 154.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 154.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 153.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 153.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 153.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 153.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 153.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 151.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 150.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 150.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 150.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 150.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 149.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 149.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 148.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 148.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 148.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 147.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 147.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 147.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 147.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 146.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 145.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 144.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 144.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 143.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 143.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 143.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 142.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 141.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 141.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 140.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 139.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 139.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 139.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 139.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 139.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 138.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 138.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 138.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 137.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 136.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 136.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 134.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 134.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 134.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 134.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 134.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 133.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 133.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 133.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 133.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 132.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 132.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 132.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 130.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 130.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 129.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 129.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 129.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 129.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 129.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 129.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 128.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 128.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 127.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 127.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 127.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 127.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 127.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 127.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 127.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 126.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 126.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 125.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 125.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 123.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 123.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 123.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 123.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 123.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 122.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 122.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 122.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 122.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 122.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 121.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 120.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 120.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 120.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 120.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 120.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 119.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 119.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 118.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 118.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 118.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 118.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 116.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 115.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 115.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 115.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 114.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 114.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 113.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 113.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 113.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 112.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 112.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 112.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 111.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 111.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 111.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 111.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 110.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 109.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 109.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 109.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 109.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 109.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 109.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 109.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 106.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 106.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 105.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 104.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 104.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 104.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 103.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 103.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 102.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 101.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 101.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 100.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 99.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 99.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 99.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 98.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 98.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 97.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 97.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 96.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 96.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 94.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 92.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 92.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 92.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 91.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 87.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 87.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 86.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 86.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 85.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 85.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 85.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 83.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 82.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 80.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 80.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 78.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 77.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 77.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 76.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 76.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 76.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 75.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 75.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 71.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 71.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 68.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 68.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 66.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 64.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 63.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 59.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 55.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 53.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 53.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 45.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 45.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 40.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 33.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

377.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 377.2
FF:10164-103B2 76 years, female 377.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.9
Pig sample Sample description nTPM
Caudate
nTPM: 20.9
Samples: 4

Max nTPM: 21.9
Min nTPM: 19.8
Sample A Female 21.9
Sample B Female 20.3
Sample C Male 19.8
Sample D Male 21.7

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