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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CDK2AP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:220.3 nTPM
FANTOM5:137.1 Scaled Tags Per Million
Pig:37.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB019377
Glial cells Medium
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 220.3
Samples: 300

Max nTPM: 542.7
Min nTPM: 94.3
Std nTPM: 81.0
Median nTPM: 202.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 542.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 531.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 451.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 442.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 432.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 428.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 402.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 396.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 391.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 389.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 388.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 385.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 384.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 383.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 383.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 378.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 378.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 375.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 371.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 364.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 360.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 359.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 355.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 351.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 349.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 342.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 342.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 337.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 336.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 335.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 334.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 333.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 332.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 328.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 324.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 321.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 320.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 319.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 316.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 314.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 312.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 311.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 310.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 308.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 307.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 304.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 303.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 303.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 301.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 300.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 298.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 297.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 295.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 292.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 291.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 290.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 290.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 288.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 286.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 286.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 285.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 285.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 285.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 284.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 282.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 282.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 281.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 280.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 279.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 279.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 278.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 278.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 278.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 271.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 270.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 265.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 264.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 263.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 263.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 261.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 260.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 259.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 258.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 257.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 255.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 252.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 251.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 251.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 250.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 249.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 249.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 248.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 248.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 248.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 248.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 246.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 245.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 245.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 244.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 244.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 244.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 240.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 240.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 240.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 240.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 239.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 239.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 238.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 238.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 237.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 237.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 236.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 235.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 234.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 234.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 232.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 232.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 231.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 230.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 230.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 229.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 229.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 228.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 225.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 223.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 223.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 223.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 222.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 222.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 221.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 221.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 221.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 220.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 219.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 219.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 218.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 215.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 215.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 211.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 211.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 211.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 209.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 205.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 205.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 204.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 204.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 204.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 203.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 203.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 202.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 202.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 202.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 201.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 199.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 197.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 197.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 197.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 197.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 195.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 195.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 194.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 193.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 192.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 191.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 191.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 191.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 190.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 189.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 189.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 187.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 187.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 185.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 185.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 183.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 183.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 182.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 182.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 181.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 181.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 179.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 178.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 178.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 177.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 177.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 177.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 176.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 176.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 175.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 175.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 174.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 174.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 174.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 173.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 173.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 173.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 172.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 171.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 171.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 170.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 170.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 170.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 169.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 169.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 169.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 169.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 168.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 168.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 168.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 168.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 168.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 167.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 167.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 166.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 166.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 166.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 164.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 164.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 163.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 163.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 163.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 163.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 162.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 160.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 160.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 159.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 159.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 158.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 157.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 155.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 153.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 153.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 152.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 151.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 151.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 151.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 151.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 150.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 150.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 149.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 149.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 148.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 147.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 147.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 146.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 146.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 144.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 143.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 142.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 141.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 141.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 141.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 140.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 140.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 139.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 139.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 139.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 139.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 139.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 138.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 138.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 137.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 135.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 135.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 135.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 134.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 134.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 134.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 134.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 133.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 132.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 132.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 132.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 130.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 130.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 129.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 128.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 127.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 126.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 125.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 125.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 125.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 124.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 124.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 123.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 119.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 118.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 117.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 116.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 116.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 116.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 115.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 115.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 114.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 110.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 110.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 105.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 98.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 95.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 94.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

137.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 137.1
FF:10164-103B2 76 years, female 137.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
Pig sample Sample description nTPM
Caudate
nTPM: 37.1
Samples: 4

Max nTPM: 45.3
Min nTPM: 33.3
Sample A Female 35.7
Sample B Female 34.2
Sample C Male 45.3
Sample D Male 33.3

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