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TPI1
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • TPI1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:381.8 nTPM
FANTOM5:67.2 Scaled Tags Per Million
Pig:356.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA050924Antibody HPA053568
Glial cells MediumNot detected
Neuronal cells LowLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

381.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 381.8
Samples: 300

Max nTPM: 1236.2
Min nTPM: 187.8
Std nTPM: 106.5
Median nTPM: 371.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1236.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 797.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 692.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 645.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 633.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 629.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 627.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 611.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 602.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 594.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 590.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 585.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 576.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 572.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 570.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 567.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 562.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 561.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 554.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 551.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 546.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 542.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 530.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 525.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 521.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 517.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 513.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 509.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 507.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 504.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 499.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 497.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 497.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 494.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 492.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 489.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 487.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 484.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 484.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 481.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 481.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 480.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 475.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 475.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 472.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 469.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 468.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 467.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 466.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 466.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 462.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 459.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 458.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 457.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 455.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 454.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 452.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 451.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 451.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 451.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 450.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 450.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 446.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 446.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 441.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 439.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 439.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 439.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 437.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 437.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 436.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 436.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 435.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 435.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 434.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 433.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 430.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 430.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 429.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 427.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 427.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 426.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 426.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 425.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 424.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 422.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 419.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 418.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 418.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 416.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 415.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 415.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 410.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 409.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 409.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 408.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 408.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 408.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 407.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 405.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 405.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 402.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 402.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 402.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 401.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 401.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 400.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 397.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 397.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 396.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 396.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 396.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 394.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 392.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 392.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 390.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 390.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 389.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 389.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 389.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 387.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 386.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 386.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 385.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 384.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 384.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 384.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 383.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 382.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 382.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 382.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 381.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 381.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 380.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 380.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 379.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 377.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 376.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 376.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 375.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 374.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 374.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 374.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 373.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 373.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 372.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 372.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 372.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 372.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 372.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 370.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 368.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 365.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 364.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 363.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 362.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 360.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 360.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 359.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 359.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 359.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 357.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 357.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 355.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 355.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 355.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 355.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 353.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 352.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 352.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 352.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 349.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 349.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 349.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 348.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 347.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 347.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 347.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 346.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 343.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 340.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 339.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 339.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 339.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 339.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 338.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 338.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 337.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 337.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 335.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 335.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 333.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 333.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 333.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 333.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 333.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 333.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 332.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 332.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 331.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 331.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 330.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 329.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 328.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 328.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 328.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 326.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 326.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 325.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 325.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 324.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 323.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 322.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 321.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 321.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 319.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 318.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 318.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 317.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 317.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 316.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 316.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 316.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 316.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 316.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 315.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 315.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 310.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 310.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 309.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 308.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 308.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 306.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 306.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 306.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 303.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 303.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 302.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 302.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 302.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 301.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 300.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 298.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 297.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 297.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 296.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 295.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 294.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 293.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 293.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 293.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 292.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 292.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 291.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 291.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 290.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 290.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 288.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 287.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 287.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 286.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 284.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 280.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 279.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 279.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 279.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 278.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 277.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 277.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 275.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 275.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 274.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 274.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 273.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 272.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 270.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 270.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 269.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 268.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 267.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 264.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 261.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 256.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 251.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 245.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 240.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 239.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 239.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 234.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 230.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 226.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 223.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 222.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 217.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 207.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 203.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 199.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 195.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 192.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 187.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.2
FF:10164-103B2 76 years, female 67.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

356.6
Pig sample Sample description nTPM
Caudate
nTPM: 356.6
Samples: 4

Max nTPM: 446.0
Min nTPM: 280.6
Sample A Female 280.6
Sample B Female 373.3
Sample C Male 446.0
Sample D Male 326.4

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