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SERINC1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SERINC1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:198.1 nTPM
FANTOM5:533.2 Scaled Tags Per Million
Pig:222.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035738Antibody HPA035739
Glial cells LowLow
Neuronal cells HighNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 198.1
Samples: 300

Max nTPM: 426.6
Min nTPM: 100.1
Std nTPM: 45.1
Median nTPM: 191.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 426.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 417.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 363.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 327.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 326.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 323.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 314.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 308.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 307.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 298.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 292.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 290.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 290.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 290.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 289.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 286.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 278.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 269.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 268.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 264.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 262.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 261.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 261.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 261.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 260.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 259.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 259.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 257.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 255.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 255.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 254.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 253.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 249.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 248.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 247.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 244.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 243.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 243.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 242.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 236.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 236.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 236.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 236.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 236.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 235.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 234.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 234.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 233.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 233.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 233.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 233.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 231.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 231.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 231.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 231.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 230.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 229.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 228.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 228.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 227.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 227.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 227.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 226.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 226.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 226.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 225.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 225.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 225.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 224.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 224.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 223.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 222.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 222.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 222.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 219.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 217.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 216.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 216.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 216.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 216.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 215.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 215.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 214.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 214.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 213.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 213.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 212.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 212.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 211.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 211.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 210.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 210.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 210.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 210.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 210.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 210.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 210.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 209.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 208.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 208.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 207.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 207.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 207.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 206.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 206.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 206.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 205.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 204.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 204.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 204.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 204.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 203.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 203.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 203.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 203.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 203.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 202.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 202.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 202.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 202.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 201.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 201.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 201.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 201.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 201.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 200.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 200.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 200.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 200.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 200.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 199.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 199.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 198.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 197.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 196.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 196.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 196.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 195.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 195.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 194.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 194.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 193.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 193.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 193.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 193.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 193.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 193.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 192.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 191.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 191.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 191.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 190.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 190.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 189.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 189.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 189.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 189.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 189.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 188.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 188.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 188.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 187.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 186.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 186.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 186.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 186.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 186.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 185.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 185.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 185.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 184.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 184.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 183.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 183.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 183.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 182.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 182.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 181.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 181.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 181.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 181.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 180.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 180.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 180.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 180.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 179.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 179.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 179.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 179.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 178.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 178.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 177.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 177.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 177.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 177.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 176.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 176.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 176.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 176.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 176.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 176.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 175.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 175.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 175.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 174.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 174.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 173.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 172.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 172.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 172.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 171.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 171.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 171.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 171.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 171.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 171.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 170.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 170.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 170.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 169.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 169.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 169.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 168.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 168.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 168.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 168.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 168.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 168.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 167.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 167.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 167.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 166.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 166.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 166.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 165.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 165.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 165.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 164.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 164.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 164.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 164.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 163.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 162.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 162.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 162.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 162.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 162.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 161.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 161.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 160.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 160.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 158.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 158.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 158.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 158.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 158.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 158.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 158.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 158.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 157.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 156.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 155.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 155.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 155.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 154.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 154.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 154.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 154.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 153.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 152.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 151.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 150.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 149.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 149.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 148.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 148.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 148.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 147.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 146.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 145.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 145.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 145.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 145.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 141.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 141.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 140.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 140.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 138.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 136.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 136.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 134.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 130.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 125.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 124.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 121.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 117.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 115.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 114.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 111.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 100.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

533.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 533.2
FF:10164-103B2 76 years, female 533.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.8
Pig sample Sample description nTPM
Caudate
nTPM: 222.8
Samples: 4

Max nTPM: 235.5
Min nTPM: 214.7
Sample A Female 220.0
Sample B Female 214.7
Sample C Male 235.5
Sample D Male 221.0

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