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WASF1
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • WASF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:72.0 nTPM
FANTOM5:241.1 Scaled Tags Per Million
Pig:168.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004105Antibody CAB022161
Glial cells Not detectedLow
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.0
Samples: 300

Max nTPM: 236.0
Min nTPM: 4.8
Std nTPM: 45.2
Median nTPM: 70.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 236.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 180.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 166.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 166.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 164.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 162.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 160.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 159.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 159.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 157.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 157.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 157.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 153.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 150.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 148.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 145.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 144.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 144.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 144.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 143.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 143.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 143.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 142.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 141.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 141.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 141.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 138.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 134.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 134.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 133.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 133.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 132.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 132.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 132.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 132.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 131.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 131.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 130.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 129.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 129.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 129.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 128.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 125.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 124.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 123.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 123.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 123.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 123.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 123.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 122.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 121.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 120.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 120.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 120.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 116.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 115.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 115.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 114.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 113.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 112.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 111.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 110.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 110.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 110.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 110.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 109.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 109.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 109.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 108.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 108.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 106.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 106.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 106.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 105.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 105.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 105.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 104.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 104.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 104.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 103.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 102.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 101.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 101.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 100.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 99.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 98.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 98.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 97.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 97.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 96.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 96.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 95.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 95.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 95.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 95.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 95.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 94.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 94.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 94.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 94.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 93.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 93.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 92.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 92.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 92.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 91.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 91.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 91.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 90.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 90.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 89.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 88.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 88.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 88.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 87.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 87.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 87.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 87.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 86.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 85.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 85.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 85.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 84.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 84.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 84.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 81.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 81.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 81.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 80.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 80.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 80.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 79.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 79.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 78.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 78.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 77.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 76.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 75.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 74.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 74.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 74.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 73.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 73.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 73.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 73.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 72.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 72.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 72.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 71.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 70.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 69.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 69.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 68.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 68.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 68.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 67.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 67.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 67.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 66.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 65.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 65.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 65.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 65.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 64.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 63.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 61.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 61.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 61.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 60.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 60.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 59.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 58.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 56.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 55.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 55.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 55.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 55.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 55.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 52.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 52.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 52.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 51.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 51.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 49.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 49.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 48.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 48.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 48.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 47.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 46.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 46.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 46.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 45.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 45.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 43.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 42.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 42.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 41.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 41.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 40.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 40.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 40.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 40.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 39.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 38.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 38.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 38.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 38.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 37.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 36.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 36.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 36.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 35.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 34.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 33.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 33.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 33.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 32.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 31.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 30.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 29.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 29.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 27.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 27.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 27.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 27.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 26.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 26.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 26.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 26.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 26.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 25.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 25.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 24.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 24.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 24.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 24.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 24.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 24.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 23.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 23.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 23.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 22.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 21.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 21.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 20.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 20.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 20.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 20.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 20.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 19.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 19.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 18.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 18.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 18.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 18.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 17.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 17.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 17.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 16.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 16.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 15.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 15.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 14.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 14.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 14.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 13.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 13.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 12.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 12.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 11.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 11.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 11.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 10.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 10.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 10.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 10.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 9.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 9.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 9.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 8.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 8.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 7.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 7.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 6.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 6.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 6.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 6.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 6.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 4.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 241.1
FF:10164-103B2 76 years, female 241.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.8
Pig sample Sample description nTPM
Caudate
nTPM: 168.8
Samples: 4

Max nTPM: 197.5
Min nTPM: 156.6
Sample A Female 156.6
Sample B Female 157.1
Sample C Male 197.5
Sample D Male 163.9

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