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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • NCL
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:133.4 nTPM
FANTOM5:380.3 Scaled Tags Per Million
Pig:110.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA023981Antibody CAB004210
Glial cells HighHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 133.4
Samples: 300

Max nTPM: 322.2
Min nTPM: 73.7
Std nTPM: 22.3
Median nTPM: 131.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 322.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 212.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 210.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 197.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 189.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 182.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 180.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 179.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 178.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 176.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 174.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 174.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 172.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 167.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 166.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 166.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 164.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 162.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 161.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 161.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 159.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 159.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 159.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 159.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 159.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 158.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 157.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 157.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 157.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 155.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 154.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 154.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 154.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 154.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 153.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 152.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 152.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 152.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 152.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 152.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 152.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 152.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 152.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 151.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 151.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 151.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 151.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 151.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 150.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 150.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 150.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 149.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 149.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 149.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 148.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 147.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 147.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 147.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 147.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 147.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 146.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 146.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 146.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 145.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 145.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 145.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 145.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 145.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 145.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 144.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 144.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 144.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 144.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 144.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 144.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 144.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 143.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 143.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 143.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 143.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 142.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 142.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 142.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 142.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 142.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 142.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 142.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 141.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 141.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 140.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 140.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 140.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 140.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 140.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 140.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 140.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 140.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 140.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 139.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 139.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 139.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 139.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 139.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 139.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 138.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 138.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 138.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 138.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 138.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 138.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 138.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 138.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 137.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 137.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 137.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 137.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 136.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 136.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 136.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 136.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 135.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 135.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 135.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 135.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 135.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 135.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 135.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 134.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 134.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 134.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 134.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 134.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 134.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 134.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 133.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 133.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 133.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 133.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 133.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 133.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 133.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 133.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 133.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 132.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 132.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 132.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 132.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 131.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 131.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 131.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 131.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 131.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 130.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 130.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 130.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 130.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 130.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 129.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 129.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 129.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 129.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 129.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 129.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 129.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 128.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 128.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 127.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 127.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 127.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 127.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 127.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 127.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 127.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 127.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 126.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 126.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 126.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 126.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 126.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 126.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 125.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 125.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 125.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 125.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 125.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 125.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 125.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 125.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 125.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 125.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 124.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 124.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 124.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 124.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 124.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 124.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 124.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 124.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 123.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 123.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 123.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 123.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 123.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 123.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 123.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 123.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 122.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 122.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 122.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 122.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 121.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 121.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 121.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 121.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 121.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 120.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 120.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 120.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 120.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 120.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 120.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 119.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 119.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 119.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 119.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 119.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 119.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 119.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 119.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 119.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 119.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 118.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 118.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 118.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 118.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 118.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 118.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 117.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 117.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 117.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 117.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 117.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 117.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 117.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 117.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 116.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 116.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 116.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 116.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 115.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 115.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 115.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 115.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 115.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 114.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 114.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 114.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 114.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 113.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 113.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 113.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 112.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 112.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 111.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 111.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 111.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 111.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 111.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 110.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 110.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 110.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 109.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 109.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 109.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 108.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 108.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 108.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 107.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 104.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 104.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 104.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 104.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 102.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 102.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 101.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 101.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 101.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 98.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 97.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 95.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 94.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 90.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 88.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 86.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 76.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 73.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

380.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 380.3
FF:10164-103B2 76 years, female 380.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.1
Pig sample Sample description nTPM
Caudate
nTPM: 110.1
Samples: 4

Max nTPM: 129.8
Min nTPM: 97.1
Sample A Female 112.7
Sample B Female 100.6
Sample C Male 129.8
Sample D Male 97.1

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