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RTN4
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • RTN4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:373.0 nTPM
FANTOM5:662.3 Scaled Tags Per Million
Pig:448.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA023977Antibody CAB005388
Glial cells HighHigh
Neuronal cells Not detectedHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 373.0
Samples: 300

Max nTPM: 980.5
Min nTPM: 154.2
Std nTPM: 132.2
Median nTPM: 341.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 980.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 838.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 817.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 814.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 787.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 743.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 719.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 642.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 638.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 637.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 635.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 624.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 623.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 607.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 599.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 595.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 595.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 588.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 580.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 578.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 578.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 571.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 570.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 561.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 557.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 555.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 555.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 554.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 549.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 545.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 544.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 542.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 537.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 536.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 533.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 532.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 532.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 530.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 528.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 526.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 524.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 521.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 521.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 519.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 517.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 516.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 510.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 508.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 502.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 502.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 496.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 494.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 492.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 491.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 487.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 484.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 484.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 481.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 480.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 480.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 480.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 475.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 473.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 472.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 471.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 470.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 469.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 469.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 467.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 466.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 464.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 461.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 457.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 453.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 452.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 452.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 451.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 447.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 447.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 441.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 441.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 440.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 439.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 438.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 437.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 434.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 433.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 431.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 430.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 428.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 424.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 420.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 417.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 417.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 417.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 416.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 415.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 414.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 413.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 412.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 410.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 408.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 406.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 406.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 406.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 404.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 404.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 404.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 402.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 402.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 400.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 400.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 399.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 399.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 397.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 393.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 392.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 386.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 386.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 385.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 385.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 384.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 382.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 381.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 380.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 378.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 377.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 376.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 375.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 374.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 373.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 373.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 373.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 372.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 371.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 363.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 363.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 361.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 359.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 353.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 351.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 350.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 349.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 348.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 345.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 345.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 344.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 343.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 342.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 342.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 341.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 340.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 339.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 339.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 337.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 336.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 335.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 333.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 333.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 332.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 332.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 332.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 330.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 329.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 329.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 329.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 328.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 328.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 327.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 326.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 325.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 324.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 324.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 323.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 323.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 323.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 322.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 321.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 321.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 320.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 320.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 320.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 320.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 319.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 319.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 318.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 317.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 313.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 311.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 311.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 311.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 309.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 307.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 306.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 305.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 305.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 304.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 303.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 301.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 301.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 301.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 300.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 298.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 298.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 297.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 297.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 296.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 295.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 294.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 293.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 291.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 291.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 290.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 289.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 289.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 287.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 286.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 282.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 282.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 281.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 280.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 279.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 278.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 274.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 274.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 273.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 273.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 271.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 271.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 270.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 268.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 268.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 268.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 266.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 266.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 265.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 260.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 259.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 258.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 256.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 253.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 252.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 252.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 250.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 250.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 248.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 248.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 247.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 247.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 243.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 241.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 240.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 240.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 239.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 238.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 237.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 237.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 236.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 234.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 233.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 232.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 232.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 231.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 231.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 230.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 229.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 228.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 227.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 227.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 226.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 225.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 225.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 220.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 219.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 219.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 219.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 219.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 218.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 218.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 216.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 213.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 208.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 207.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 206.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 203.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 200.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 199.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 198.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 195.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 195.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 193.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 191.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 190.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 190.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 190.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 190.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 188.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 173.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 165.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 154.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

662.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 662.3
FF:10164-103B2 76 years, female 662.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

448.3
Pig sample Sample description nTPM
Caudate
nTPM: 448.3
Samples: 4

Max nTPM: 506.4
Min nTPM: 401.6
Sample A Female 448.5
Sample B Female 401.6
Sample C Male 506.4
Sample D Male 436.6

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