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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SPP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:289.3 nTPM
FANTOM5:438.0 Scaled Tags Per Million
Pig:79.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA027541
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 289.3
Samples: 300

Max nTPM: 7549.0
Min nTPM: 22.2
Std nTPM: 694.0
Median nTPM: 155.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 7549.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 7325.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 5322.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1941.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1249.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1231.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1118.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1115.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1067.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1027.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 950.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 903.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 860.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 852.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 846.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 818.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 781.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 765.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 740.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 700.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 605.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 598.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 560.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 558.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 556.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 546.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 542.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 524.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 522.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 473.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 464.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 445.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 430.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 430.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 422.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 400.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 396.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 372.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 368.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 367.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 358.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 355.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 349.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 349.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 347.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 342.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 336.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 324.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 320.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 314.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 313.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 308.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 305.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 300.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 297.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 296.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 292.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 290.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 285.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 283.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 276.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 273.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 272.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 264.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 261.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 259.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 259.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 253.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 252.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 252.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 249.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 248.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 241.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 237.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 236.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 235.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 234.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 231.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 231.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 231.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 228.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 228.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 227.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 227.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 224.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 220.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 220.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 218.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 213.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 212.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 212.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 212.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 211.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 211.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 211.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 210.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 209.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 209.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 208.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 204.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 201.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 199.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 199.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 198.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 197.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 197.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 196.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 195.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 194.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 193.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 192.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 191.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 191.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 191.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 189.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 189.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 189.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 189.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 189.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 187.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 186.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 185.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 185.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 185.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 181.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 180.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 180.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 180.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 177.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 177.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 176.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 176.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 176.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 175.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 175.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 175.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 172.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 169.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 168.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 168.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 167.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 165.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 165.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 163.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 162.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 162.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 161.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 161.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 159.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 156.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 155.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 153.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 152.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 151.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 149.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 149.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 147.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 145.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 145.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 145.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 145.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 144.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 143.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 143.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 143.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 143.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 141.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 141.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 141.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 141.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 140.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 140.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 140.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 140.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 139.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 139.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 138.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 138.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 136.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 135.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 135.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 134.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 133.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 132.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 131.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 130.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 130.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 130.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 130.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 129.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 128.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 126.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 125.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 125.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 124.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 124.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 122.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 121.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 121.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 119.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 119.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 118.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 118.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 118.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 118.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 117.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 116.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 115.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 115.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 115.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 114.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 112.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 111.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 109.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 109.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 108.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 108.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 108.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 108.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 107.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 106.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 106.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 106.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 104.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 103.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 102.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 102.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 102.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 100.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 99.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 99.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 98.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 97.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 95.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 94.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 94.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 94.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 92.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 91.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 91.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 90.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 90.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 90.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 88.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 88.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 88.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 88.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 86.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 86.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 85.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 85.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 85.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 85.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 84.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 83.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 82.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 79.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 77.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 77.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 76.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 76.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 76.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 75.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 73.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 71.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 71.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 70.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 70.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 69.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 69.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 69.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 68.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 67.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 67.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 65.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 64.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 62.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 61.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 60.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 59.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 59.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 58.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 53.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 52.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 52.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 52.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 49.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 48.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 47.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 46.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 43.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 37.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 35.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 35.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 26.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 23.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 22.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

438.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 438.0
FF:10164-103B2 76 years, female 438.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
Pig sample Sample description nTPM
Caudate
nTPM: 79.7
Samples: 4

Max nTPM: 86.6
Min nTPM: 72.7
Sample A Female 85.9
Sample B Female 73.5
Sample C Male 86.6
Sample D Male 72.7

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