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ALDH6A1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ALDH6A1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:66.9 nTPM
FANTOM5:159.7 Scaled Tags Per Million
Pig:46.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029072Antibody HPA029073Antibody HPA029074Antibody HPA029075
Glial cells HighHighHighMedium
Neuronal cells LowNot detectedNot detectedNot detected









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.9
Samples: 300

Max nTPM: 142.3
Min nTPM: 9.4
Std nTPM: 23.5
Median nTPM: 64.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 142.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 135.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 129.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 127.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 125.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 125.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 122.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 122.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 120.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 120.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 114.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 111.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 110.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 109.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 109.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 108.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 105.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 105.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 105.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 104.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 103.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 103.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 103.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 102.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 101.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 101.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 98.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 97.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 97.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 96.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 96.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 96.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 96.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 95.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 95.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 94.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 93.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 93.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 93.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 93.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 92.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 92.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 92.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 91.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 90.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 90.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 90.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 90.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 90.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 90.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 90.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 90.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 89.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 88.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 88.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 88.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 87.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 87.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 86.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 86.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 84.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 84.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 84.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 83.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 83.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 83.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 83.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 82.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 82.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 82.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 82.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 81.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 81.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 81.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 81.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 80.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 79.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 79.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 79.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 79.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 79.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 78.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 78.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 78.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 78.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 78.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 77.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 77.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 77.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 77.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 77.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 77.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 77.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 76.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 76.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 75.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 75.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 75.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 75.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 75.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 74.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 74.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 74.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 73.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 73.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 73.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 73.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 73.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 73.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 73.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 72.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 72.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 72.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 72.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 72.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 72.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 71.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 71.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 70.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 70.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 70.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 70.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 70.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 69.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 69.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 69.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 68.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 68.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 68.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 68.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 68.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 68.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 68.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 67.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 67.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 67.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 67.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 67.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 66.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 66.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 66.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 66.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 66.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 66.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 66.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 65.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 65.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 65.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 64.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 64.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 64.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 64.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 64.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 64.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 64.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 64.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 64.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 63.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 63.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 63.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 63.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 63.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 63.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 63.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 62.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 62.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 62.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 61.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 61.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 61.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 60.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 60.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 60.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 60.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 60.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 60.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 60.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 59.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 59.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 59.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 59.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 59.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 59.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 59.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 59.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 59.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 59.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 58.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 58.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 58.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 57.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 57.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 57.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 57.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 56.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 56.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 56.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 55.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 55.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 55.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 55.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 55.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 54.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 54.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 54.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 54.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 54.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 53.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 53.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 53.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 53.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 53.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 53.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 53.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 52.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 52.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 52.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 51.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 51.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 51.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 51.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 50.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 50.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 50.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 50.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 49.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 49.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 49.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 48.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 48.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 48.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 48.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 48.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 47.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 47.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 47.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 47.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 46.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 46.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 46.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 46.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 46.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 46.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 45.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 45.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 45.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 44.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 44.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 44.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 44.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 44.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 43.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 43.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 43.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 43.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 42.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 42.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 42.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 41.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 41.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 41.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 40.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 40.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 39.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 39.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 38.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 38.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 38.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 37.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 37.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 36.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 35.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 35.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 34.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 33.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 33.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 32.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 31.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 30.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 30.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 29.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 29.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 27.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 25.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 23.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 22.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 20.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 19.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 18.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 17.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 16.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 15.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 12.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 9.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 159.7
FF:10164-103B2 76 years, female 159.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.5
Pig sample Sample description nTPM
Caudate
nTPM: 46.6
Samples: 4

Max nTPM: 51.2
Min nTPM: 40.0
Sample A Female 46.1
Sample B Female 51.2
Sample C Male 48.9
Sample D Male 40.0

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