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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • CYSTM1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:124.9 nTPM
FANTOM5:134.5 Scaled Tags Per Million
Pig:4.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA050930
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 124.9
Samples: 300

Max nTPM: 277.7
Min nTPM: 50.6
Std nTPM: 38.5
Median nTPM: 118.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 277.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 264.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 254.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 245.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 236.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 227.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 224.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 219.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 219.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 218.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 217.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 214.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 211.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 210.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 208.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 203.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 203.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 201.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 199.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 198.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 195.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 194.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 192.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 191.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 191.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 189.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 188.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 183.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 180.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 178.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 178.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 176.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 176.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 176.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 171.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 168.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 168.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 166.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 165.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 165.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 164.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 163.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 163.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 163.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 162.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 162.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 161.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 160.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 159.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 159.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 158.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 157.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 156.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 155.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 155.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 153.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 152.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 151.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 149.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 149.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 149.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 148.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 148.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 147.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 147.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 147.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 146.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 145.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 145.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 145.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 145.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 144.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 143.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 142.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 142.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 141.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 140.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 140.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 140.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 140.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 139.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 139.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 138.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 138.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 138.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 136.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 134.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 134.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 134.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 132.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 132.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 132.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 132.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 130.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 130.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 130.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 129.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 129.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 129.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 129.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 128.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 128.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 128.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 128.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 128.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 127.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 127.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 127.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 127.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 127.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 127.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 126.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 126.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 126.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 126.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 125.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 125.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 125.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 124.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 124.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 124.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 124.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 124.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 124.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 123.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 123.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 123.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 122.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 122.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 122.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 122.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 122.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 122.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 122.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 122.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 122.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 121.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 121.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 121.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 121.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 121.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 120.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 120.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 119.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 119.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 119.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 119.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 118.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 118.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 118.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 117.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 117.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 117.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 117.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 117.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 117.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 117.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 117.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 116.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 116.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 115.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 115.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 115.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 114.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 114.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 114.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 113.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 113.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 113.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 112.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 112.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 112.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 112.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 111.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 111.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 111.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 111.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 111.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 111.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 110.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 110.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 109.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 109.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 108.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 108.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 108.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 108.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 108.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 108.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 108.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 108.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 108.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 107.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 107.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 107.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 107.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 107.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 106.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 106.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 106.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 105.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 104.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 104.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 104.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 103.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 103.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 102.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 102.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 102.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 101.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 101.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 101.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 101.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 101.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 101.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 101.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 100.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 100.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 99.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 99.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 99.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 99.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 98.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 98.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 98.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 98.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 97.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 96.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 95.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 95.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 94.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 94.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 93.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 93.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 93.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 93.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 92.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 92.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 92.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 92.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 91.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 91.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 91.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 91.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 91.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 90.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 89.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 89.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 88.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 88.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 88.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 88.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 87.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 87.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 87.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 87.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 86.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 86.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 86.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 85.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 84.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 84.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 83.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 83.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 83.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 83.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 83.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 83.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 82.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 82.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 82.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 81.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 81.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 81.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 81.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 80.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 80.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 80.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 78.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 78.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 78.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 78.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 77.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 76.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 74.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 74.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 74.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 73.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 73.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 72.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 70.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 68.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 67.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 63.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 62.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 50.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 134.5
FF:10164-103B2 76 years, female 134.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 4.1
Sample C Male 4.5
Sample D Male 3.7

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