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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • PFDN5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:629.5 nTPM
FANTOM5:240.2 Scaled Tags Per Million
Pig:48.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008587
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

629.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 629.5
Samples: 300

Max nTPM: 1832.3
Min nTPM: 344.4
Std nTPM: 192.3
Median nTPM: 580.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1832.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1610.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1270.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1222.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1176.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1142.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1141.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1129.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1110.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1083.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1053.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1023.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1001.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 999.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 974.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 973.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 958.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 951.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 935.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 928.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 927.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 925.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 923.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 913.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 902.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 896.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 896.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 895.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 890.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 867.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 865.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 863.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 861.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 858.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 851.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 845.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 836.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 828.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 822.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 813.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 809.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 808.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 785.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 780.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 778.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 776.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 776.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 769.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 768.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 768.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 761.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 760.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 760.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 753.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 751.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 749.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 745.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 744.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 744.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 743.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 743.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 743.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 742.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 741.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 740.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 740.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 739.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 737.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 729.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 729.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 729.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 728.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 724.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 720.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 719.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 717.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 715.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 713.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 710.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 710.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 708.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 703.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 703.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 701.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 701.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 700.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 699.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 696.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 691.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 690.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 686.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 684.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 681.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 679.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 669.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 669.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 667.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 666.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 664.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 664.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 662.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 660.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 656.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 654.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 652.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 651.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 649.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 647.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 647.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 642.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 640.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 640.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 639.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 639.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 633.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 632.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 631.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 630.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 630.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 629.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 629.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 628.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 627.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 625.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 624.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 621.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 617.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 617.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 614.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 613.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 612.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 609.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 607.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 606.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 605.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 605.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 602.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 601.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 600.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 597.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 597.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 596.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 596.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 596.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 595.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 591.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 588.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 585.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 584.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 580.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 580.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 580.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 580.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 579.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 579.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 579.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 577.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 574.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 572.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 570.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 570.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 569.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 567.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 566.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 566.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 566.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 565.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 565.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 564.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 563.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 563.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 563.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 562.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 560.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 559.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 557.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 557.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 556.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 555.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 551.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 551.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 550.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 549.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 548.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 547.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 546.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 542.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 541.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 541.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 541.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 541.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 538.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 537.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 535.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 534.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 533.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 533.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 532.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 532.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 531.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 531.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 531.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 531.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 530.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 529.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 529.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 529.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 528.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 528.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 524.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 523.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 522.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 516.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 516.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 513.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 511.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 509.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 509.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 509.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 507.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 507.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 506.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 505.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 502.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 500.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 500.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 498.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 497.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 496.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 496.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 493.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 492.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 492.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 492.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 489.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 488.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 488.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 486.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 485.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 485.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 483.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 482.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 482.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 481.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 481.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 480.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 476.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 471.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 466.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 466.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 464.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 463.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 463.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 463.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 460.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 459.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 459.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 458.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 458.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 456.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 453.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 451.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 451.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 449.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 448.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 447.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 445.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 443.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 439.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 439.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 439.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 438.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 438.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 436.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 435.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 433.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 430.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 420.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 416.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 416.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 414.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 412.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 410.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 410.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 408.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 407.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 406.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 401.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 398.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 392.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 390.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 386.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 386.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 386.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 385.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 377.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 371.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 366.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 351.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 344.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

240.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 240.2
FF:10164-103B2 76 years, female 240.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.8
Pig sample Sample description nTPM
Caudate
nTPM: 48.8
Samples: 4

Max nTPM: 51.7
Min nTPM: 45.7
Sample A Female 47.7
Sample B Female 50.2
Sample C Male 51.7
Sample D Male 45.7

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