We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PLP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PLP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1439.5 nTPM
FANTOM5:1251.8 Scaled Tags Per Million
Pig:804.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004128
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1439.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1439.5
Samples: 300

Max nTPM: 7940.3
Min nTPM: 214.3
Std nTPM: 882.9
Median nTPM: 1225.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 7940.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 5743.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 5166.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 4996.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 4201.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 4073.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3726.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3643.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 3208.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 3086.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3069.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3030.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 3023.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2966.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2875.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 2782.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 2727.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2684.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2674.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2633.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2623.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2608.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 2594.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 2593.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2587.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 2548.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2548.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2516.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2489.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 2484.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2482.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2477.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 2468.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2456.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 2428.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2423.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2362.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2343.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2337.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 2288.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2282.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 2248.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2225.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2207.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2194.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2177.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2127.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 2123.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 2106.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 2091.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2081.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2072.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2066.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2060.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2056.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2029.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2017.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2011.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2008.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2000.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1996.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1984.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1955.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1954.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1931.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1924.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1892.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1880.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1877.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1863.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1852.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1851.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1829.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1813.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1806.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1804.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1784.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1777.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1767.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1742.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1696.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1679.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1677.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1646.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1635.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1622.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1619.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1608.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1601.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1597.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1571.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1568.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1565.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1559.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1558.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1553.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1551.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1551.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1547.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1545.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1541.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1538.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1530.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1530.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1530.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1528.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1525.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1524.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1518.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1502.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1471.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1468.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1465.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1449.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1444.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1441.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1431.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1404.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1401.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1401.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1398.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1391.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1386.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1377.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1376.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1367.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1366.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1360.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1359.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1358.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1352.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1343.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1340.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1332.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1329.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1325.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1325.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1318.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1317.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1311.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1305.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1297.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1295.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1278.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1274.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1266.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1255.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1254.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1235.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1227.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1223.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1216.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1213.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1213.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1212.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1212.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1211.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1211.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1204.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1195.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1194.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1183.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1182.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1177.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1173.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1169.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1168.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1163.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1149.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1132.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1132.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1118.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1098.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1096.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1096.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1091.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1083.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1081.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1072.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1055.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1052.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1051.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1049.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1047.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1015.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1008.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1005.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1001.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 999.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 996.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 994.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 980.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 979.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 971.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 970.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 966.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 962.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 962.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 962.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 961.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 956.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 941.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 940.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 937.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 937.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 932.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 929.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 926.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 919.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 917.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 913.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 908.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 906.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 903.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 900.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 887.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 883.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 882.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 873.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 866.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 861.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 857.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 853.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 851.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 849.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 843.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 843.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 837.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 832.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 828.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 828.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 825.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 822.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 821.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 816.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 814.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 810.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 804.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 803.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 797.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 796.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 795.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 794.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 791.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 788.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 786.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 786.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 780.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 778.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 777.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 776.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 773.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 761.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 761.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 755.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 748.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 747.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 729.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 715.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 702.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 688.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 687.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 686.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 685.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 664.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 661.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 656.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 633.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 626.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 623.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 618.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 615.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 615.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 614.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 608.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 601.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 596.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 593.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 592.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 567.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 561.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 560.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 558.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 555.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 553.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 542.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 539.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 533.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 532.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 518.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 502.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 471.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 465.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 458.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 451.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 436.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 404.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 367.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 344.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 214.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1251.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1251.8
FF:10164-103B2 76 years, female 1251.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

804.5
Pig sample Sample description nTPM
Caudate
nTPM: 804.5
Samples: 4

Max nTPM: 896.0
Min nTPM: 633.2
Sample A Female 892.2
Sample B Female 633.2
Sample C Male 796.5
Sample D Male 896.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo