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TM9SF2
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TM9SF2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:32.5 nTPM
FANTOM5:131.5 Scaled Tags Per Million
Pig:43.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA005657
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.5
Samples: 300

Max nTPM: 69.3
Min nTPM: 16.6
Std nTPM: 5.3
Median nTPM: 32.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 69.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 47.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 46.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 45.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 44.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 44.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 43.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 43.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 43.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 42.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 42.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 41.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 41.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 41.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 41.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 40.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 40.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 40.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 40.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 40.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 39.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 39.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 39.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 39.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 39.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 39.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 38.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 38.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 38.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 38.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 38.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 38.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 38.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 37.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 37.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 37.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 37.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 37.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 36.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 36.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 36.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 36.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 36.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 36.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 36.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 36.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 36.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 36.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 36.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 36.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 36.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 36.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 36.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 36.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 35.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 35.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 35.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 35.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 35.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 35.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 35.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 35.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 35.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 35.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 35.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 35.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 35.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 35.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 35.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 35.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 34.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 34.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 34.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 34.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 34.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 34.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 34.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 34.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 34.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 34.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 34.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 34.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 34.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 34.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 34.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 34.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 34.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 34.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 34.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 34.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 34.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 34.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 34.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 34.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 34.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 34.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 33.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 33.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 33.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 33.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 33.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 33.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 33.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 33.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 33.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 33.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 33.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 33.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 33.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 33.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 33.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 33.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 33.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 33.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 33.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 33.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 33.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 33.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 33.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 33.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 33.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 33.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 33.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 33.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 32.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 32.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 32.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 32.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 32.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 32.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 32.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 32.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 32.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 32.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 32.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 32.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 32.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 32.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 32.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 32.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 32.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 32.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 32.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 32.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 32.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 32.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 32.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 31.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 31.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 31.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 31.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 31.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 31.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 31.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 31.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 31.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 31.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 31.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 31.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 31.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 31.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 31.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 31.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 31.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 31.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 31.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 31.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 31.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 31.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 31.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 31.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 31.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 31.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 31.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 31.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 31.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 31.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 31.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 30.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 30.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 30.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 30.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 30.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 30.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 30.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 30.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 30.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 30.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 30.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 30.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 30.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 30.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 30.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 30.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 30.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 30.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 30.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 30.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 30.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 30.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 30.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 30.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 30.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 30.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 30.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 30.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 30.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 30.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 30.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 30.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 30.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 30.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 30.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 30.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 30.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 30.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 30.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 30.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 29.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 29.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 29.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 29.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 29.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 29.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 29.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 29.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 29.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 29.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 29.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 29.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 29.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 29.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 29.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 29.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 29.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 29.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 28.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 28.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 28.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 28.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 28.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 28.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 28.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 28.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 28.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 28.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 28.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 28.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 28.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 28.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 28.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 28.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 28.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 27.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 27.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 27.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 27.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 27.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 27.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 27.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 27.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 27.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 27.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 26.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 26.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 26.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 26.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 26.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 26.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 26.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 26.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 25.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 25.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 25.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 25.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 25.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 25.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 25.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 24.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 24.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 24.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 23.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 23.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 23.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 23.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 23.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 23.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 23.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 23.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 22.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 22.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 21.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 19.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 18.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 16.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 131.5
FF:10164-103B2 76 years, female 131.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.7
Pig sample Sample description nTPM
Caudate
nTPM: 43.7
Samples: 4

Max nTPM: 47.5
Min nTPM: 40.0
Sample A Female 45.4
Sample B Female 40.0
Sample C Male 47.5
Sample D Male 41.8

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