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  • SUMMARY

  • TISSUE

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  • LAMP5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Medium
Synapses: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:135.8 nTPM
FANTOM5:515.9 Scaled Tags Per Million
Pig:184.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA004802
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections Medium
Synapses Medium

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004802
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 135.8
Samples: 300

Max nTPM: 517.9
Min nTPM: 3.2
Std nTPM: 100.7
Median nTPM: 115.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 517.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 446.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 414.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 405.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 401.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 381.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 373.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 362.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 356.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 353.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 351.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 338.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 337.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 334.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 333.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 328.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 326.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 325.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 324.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 315.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 307.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 307.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 299.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 299.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 297.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 287.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 283.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 282.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 281.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 280.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 278.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 278.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 277.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 274.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 273.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 263.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 260.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 259.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 258.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 258.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 254.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 253.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 252.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 248.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 248.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 247.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 245.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 242.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 241.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 236.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 236.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 236.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 230.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 227.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 227.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 227.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 226.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 224.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 223.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 223.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 221.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 220.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 219.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 215.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 214.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 214.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 214.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 213.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 209.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 208.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 206.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 205.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 205.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 204.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 201.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 200.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 199.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 199.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 199.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 198.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 197.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 196.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 192.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 189.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 186.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 182.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 182.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 182.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 182.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 179.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 179.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 178.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 177.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 176.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 173.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 171.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 170.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 167.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 167.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 166.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 165.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 161.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 161.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 160.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 159.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 158.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 157.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 157.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 156.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 154.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 154.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 153.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 153.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 153.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 152.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 152.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 152.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 150.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 150.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 148.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 144.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 144.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 143.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 143.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 142.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 142.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 141.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 141.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 140.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 136.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 135.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 135.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 134.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 133.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 132.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 130.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 130.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 128.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 126.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 125.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 125.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 125.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 124.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 123.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 123.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 123.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 120.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 118.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 117.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 113.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 113.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 112.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 112.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 112.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 112.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 112.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 111.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 110.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 106.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 106.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 106.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 105.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 103.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 103.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 102.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 101.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 100.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 98.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 98.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 98.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 97.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 96.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 96.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 96.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 96.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 94.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 92.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 90.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 89.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 88.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 86.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 86.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 84.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 81.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 80.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 78.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 78.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 76.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 76.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 75.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 75.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 75.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 74.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 74.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 73.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 73.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 73.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 71.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 69.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 67.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 67.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 66.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 65.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 62.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 62.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 62.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 61.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 61.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 60.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 60.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 58.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 58.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 58.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 58.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 57.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 56.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 55.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 53.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 53.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 53.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 52.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 51.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 49.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 49.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 47.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 47.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 47.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 45.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 44.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 43.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 43.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 43.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 43.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 42.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 42.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 41.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 39.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 38.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 38.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 36.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 36.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 35.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 34.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 34.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 34.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 34.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 34.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 33.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 32.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 31.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 31.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 30.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 30.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 29.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 29.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 27.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 27.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 27.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 27.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 26.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 26.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 25.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 25.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 24.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 22.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 22.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 22.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 21.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 20.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 20.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 19.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 19.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 17.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 16.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 15.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 15.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 15.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 14.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 14.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 13.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 13.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 13.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 12.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 11.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 11.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 9.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 8.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 8.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 6.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 6.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 4.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 3.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

515.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 515.9
FF:10164-103B2 76 years, female 515.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.6
Pig sample Sample description nTPM
Caudate
nTPM: 184.6
Samples: 4

Max nTPM: 222.1
Min nTPM: 153.8
Sample A Female 153.8
Sample B Female 180.2
Sample C Male 222.1
Sample D Male 182.4

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