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  • TISSUE

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  • PRDX5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:345.1 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:70.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA037915Antibody HPA037916Antibody CAB008661
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedMediumMedium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

345.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 345.1
Samples: 300

Max nTPM: 775.6
Min nTPM: 156.4
Std nTPM: 93.9
Median nTPM: 324.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 775.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 748.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 727.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 712.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 654.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 596.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 590.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 569.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 548.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 548.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 546.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 546.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 538.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 537.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 527.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 521.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 517.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 507.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 497.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 485.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 481.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 480.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 474.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 473.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 472.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 472.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 471.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 463.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 454.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 452.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 450.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 446.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 446.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 442.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 441.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 441.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 440.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 440.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 439.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 438.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 438.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 436.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 434.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 434.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 433.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 430.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 429.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 426.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 424.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 423.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 421.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 421.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 420.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 418.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 413.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 412.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 412.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 412.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 411.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 411.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 410.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 410.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 409.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 408.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 407.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 405.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 403.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 403.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 401.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 400.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 399.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 398.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 397.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 395.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 394.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 394.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 394.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 391.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 391.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 389.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 388.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 388.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 387.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 387.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 386.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 385.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 382.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 379.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 379.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 376.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 376.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 371.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 370.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 368.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 366.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 366.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 364.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 364.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 363.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 363.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 361.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 361.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 360.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 359.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 359.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 358.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 357.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 357.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 357.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 356.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 353.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 352.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 352.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 350.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 348.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 348.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 347.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 347.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 344.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 343.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 342.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 341.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 340.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 340.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 340.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 338.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 337.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 336.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 335.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 333.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 333.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 333.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 332.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 332.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 331.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 331.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 331.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 331.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 329.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 329.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 329.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 328.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 327.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 327.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 326.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 326.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 325.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 325.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 324.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 324.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 324.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 324.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 323.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 323.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 322.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 322.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 322.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 321.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 320.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 320.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 320.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 320.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 319.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 318.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 317.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 317.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 316.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 316.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 316.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 316.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 315.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 315.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 314.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 314.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 314.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 313.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 313.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 313.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 313.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 312.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 311.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 311.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 310.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 309.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 308.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 308.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 308.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 308.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 308.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 307.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 306.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 306.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 305.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 305.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 305.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 305.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 304.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 303.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 302.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 302.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 301.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 300.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 300.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 299.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 297.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 297.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 296.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 296.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 293.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 293.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 292.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 292.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 291.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 291.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 291.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 291.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 290.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 290.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 289.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 288.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 286.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 285.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 285.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 285.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 285.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 285.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 284.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 283.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 283.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 283.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 282.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 282.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 281.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 280.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 280.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 280.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 277.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 277.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 277.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 276.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 276.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 274.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 274.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 274.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 273.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 272.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 272.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 270.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 270.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 269.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 268.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 268.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 266.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 266.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 266.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 265.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 265.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 263.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 263.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 262.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 262.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 260.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 258.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 258.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 255.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 254.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 253.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 248.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 247.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 247.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 247.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 246.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 245.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 244.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 241.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 241.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 239.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 239.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 236.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 233.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 230.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 227.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 227.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 224.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 224.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 220.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 216.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 215.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 211.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 209.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 207.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 206.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 205.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 204.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 199.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 189.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 180.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 180.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 174.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 156.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 167.4
FF:10164-103B2 76 years, female 167.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.9
Pig sample Sample description nTPM
Caudate
nTPM: 70.9
Samples: 4

Max nTPM: 75.7
Min nTPM: 59.3
Sample A Female 74.2
Sample B Female 74.4
Sample C Male 75.7
Sample D Male 59.3

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