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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PIN1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:159.1 nTPM
FANTOM5:114.2 Scaled Tags Per Million
Pig:211.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB004528Antibody CAB009326
Glial cells Not detectedNot detected
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 159.1
Samples: 300

Max nTPM: 352.3
Min nTPM: 55.5
Std nTPM: 53.9
Median nTPM: 149.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 352.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 349.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 342.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 334.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 323.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 318.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 296.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 289.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 287.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 278.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 274.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 265.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 264.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 259.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 254.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 251.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 251.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 248.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 248.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 247.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 242.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 239.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 236.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 235.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 233.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 229.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 228.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 225.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 224.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 224.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 224.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 223.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 223.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 223.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 223.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 222.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 222.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 218.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 217.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 217.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 216.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 216.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 213.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 212.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 211.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 211.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 211.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 210.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 210.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 208.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 207.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 207.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 206.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 206.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 206.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 206.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 204.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 203.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 202.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 199.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 199.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 199.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 198.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 196.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 196.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 196.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 196.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 194.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 194.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 194.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 193.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 192.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 192.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 192.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 192.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 192.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 190.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 190.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 190.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 189.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 189.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 188.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 187.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 187.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 185.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 185.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 185.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 184.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 184.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 184.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 182.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 181.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 180.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 179.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 178.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 177.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 177.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 176.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 176.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 175.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 175.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 175.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 175.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 174.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 174.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 173.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 173.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 172.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 172.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 170.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 170.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 170.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 169.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 169.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 168.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 168.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 167.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 167.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 167.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 166.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 165.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 164.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 163.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 163.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 163.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 162.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 161.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 161.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 161.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 159.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 159.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 159.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 159.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 158.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 158.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 157.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 156.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 156.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 156.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 155.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 154.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 154.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 153.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 152.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 151.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 151.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 150.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 150.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 150.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 149.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 149.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 149.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 149.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 149.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 149.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 149.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 148.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 147.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 147.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 146.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 146.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 146.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 146.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 146.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 146.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 146.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 145.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 145.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 145.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 145.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 144.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 143.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 143.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 142.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 142.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 142.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 142.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 142.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 141.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 141.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 141.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 141.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 139.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 138.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 137.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 135.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 135.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 135.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 134.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 134.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 133.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 133.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 133.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 132.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 132.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 132.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 132.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 131.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 131.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 131.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 131.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 130.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 130.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 129.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 129.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 129.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 129.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 128.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 128.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 128.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 127.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 127.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 127.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 125.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 125.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 124.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 124.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 123.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 122.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 122.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 121.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 121.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 121.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 121.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 121.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 119.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 119.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 119.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 118.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 118.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 117.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 117.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 117.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 116.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 116.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 116.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 115.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 114.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 114.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 114.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 113.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 113.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 112.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 112.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 112.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 111.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 111.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 109.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 109.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 108.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 107.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 107.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 107.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 107.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 107.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 106.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 105.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 105.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 104.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 104.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 104.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 103.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 103.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 101.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 100.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 100.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 99.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 98.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 97.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 95.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 94.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 93.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 93.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 92.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 92.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 89.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 89.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 89.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 89.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 88.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 87.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 86.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 85.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 82.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 79.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 78.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 78.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 76.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 76.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 76.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 72.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 71.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 69.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 60.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 58.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 55.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.2
FF:10164-103B2 76 years, female 114.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.0
Pig sample Sample description nTPM
Caudate
nTPM: 211.0
Samples: 4

Max nTPM: 253.8
Min nTPM: 173.9
Sample A Female 173.9
Sample B Female 226.4
Sample C Male 253.8
Sample D Male 189.9

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