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ATP6V1F
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ATP6V1F
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:243.7 nTPM
FANTOM5:188.6 Scaled Tags Per Million
Pig:115.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA048700Antibody HPA062011Antibody CAB009529
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedMediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 243.7
Samples: 300

Max nTPM: 520.7
Min nTPM: 122.7
Std nTPM: 65.4
Median nTPM: 237.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 520.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 517.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 502.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 433.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 432.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 410.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 395.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 390.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 382.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 375.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 375.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 367.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 364.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 359.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 348.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 346.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 346.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 345.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 341.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 341.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 339.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 339.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 336.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 335.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 334.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 331.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 330.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 329.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 327.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 324.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 324.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 322.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 322.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 318.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 317.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 316.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 315.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 311.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 311.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 310.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 309.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 308.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 308.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 306.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 303.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 303.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 302.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 302.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 301.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 300.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 300.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 299.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 297.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 296.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 296.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 295.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 294.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 294.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 294.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 294.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 292.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 292.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 292.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 291.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 291.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 291.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 290.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 289.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 289.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 285.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 285.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 285.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 284.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 282.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 281.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 281.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 281.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 280.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 280.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 279.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 278.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 278.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 277.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 276.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 276.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 276.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 274.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 270.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 269.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 269.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 269.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 268.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 267.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 267.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 266.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 264.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 264.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 263.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 263.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 262.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 261.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 261.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 260.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 260.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 260.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 260.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 259.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 257.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 257.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 257.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 257.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 257.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 257.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 255.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 255.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 254.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 253.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 252.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 252.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 251.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 250.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 247.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 247.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 246.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 246.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 246.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 246.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 246.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 246.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 245.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 245.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 244.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 243.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 243.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 242.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 242.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 241.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 241.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 241.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 241.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 240.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 240.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 239.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 239.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 239.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 238.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 238.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 238.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 238.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 237.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 237.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 237.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 236.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 236.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 235.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 235.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 234.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 234.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 234.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 233.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 231.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 231.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 231.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 231.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 231.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 231.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 230.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 229.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 229.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 228.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 228.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 228.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 227.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 227.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 226.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 225.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 225.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 225.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 224.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 224.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 223.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 223.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 222.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 222.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 221.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 221.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 220.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 220.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 220.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 219.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 218.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 217.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 217.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 216.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 216.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 215.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 215.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 214.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 214.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 214.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 214.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 213.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 213.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 212.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 211.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 211.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 211.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 210.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 210.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 209.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 209.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 209.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 209.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 208.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 206.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 206.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 205.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 205.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 204.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 204.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 203.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 203.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 203.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 203.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 202.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 200.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 199.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 198.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 196.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 195.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 195.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 195.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 195.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 193.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 193.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 193.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 193.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 192.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 190.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 189.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 188.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 188.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 188.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 187.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 186.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 183.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 182.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 181.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 179.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 179.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 178.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 177.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 177.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 177.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 177.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 175.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 173.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 173.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 173.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 172.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 172.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 170.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 169.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 169.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 168.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 166.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 165.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 165.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 165.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 164.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 164.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 163.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 161.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 160.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 159.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 159.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 159.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 158.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 157.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 157.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 153.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 152.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 151.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 151.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 150.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 148.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 148.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 147.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 147.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 146.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 140.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 138.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 138.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 136.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 134.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 134.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 132.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 125.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 123.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 122.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

188.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 188.6
FF:10164-103B2 76 years, female 188.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.5
Pig sample Sample description nTPM
Caudate
nTPM: 115.5
Samples: 4

Max nTPM: 133.5
Min nTPM: 104.0
Sample A Female 107.1
Sample B Female 117.4
Sample C Male 133.5
Sample D Male 104.0

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