We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SNRPN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SNRPN
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:433.1 nTPM
FANTOM5:698.9 Scaled Tags Per Million
Pig:327.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003482
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 433.1
Samples: 300

Max nTPM: 1127.6
Min nTPM: 133.8
Std nTPM: 131.3
Median nTPM: 418.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1127.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 895.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 779.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 770.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 765.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 758.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 749.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 723.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 704.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 700.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 683.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 678.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 677.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 669.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 668.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 663.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 657.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 649.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 643.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 638.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 636.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 635.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 632.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 626.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 626.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 625.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 616.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 615.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 615.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 613.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 612.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 612.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 607.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 606.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 598.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 598.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 597.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 591.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 585.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 582.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 581.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 580.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 580.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 578.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 577.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 576.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 574.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 573.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 572.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 572.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 564.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 556.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 550.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 550.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 549.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 540.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 534.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 533.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 528.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 527.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 524.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 523.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 523.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 521.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 519.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 518.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 516.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 515.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 513.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 512.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 510.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 510.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 506.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 506.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 504.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 503.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 502.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 501.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 499.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 496.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 496.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 495.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 493.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 492.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 492.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 488.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 483.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 481.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 480.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 480.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 479.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 479.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 478.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 478.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 477.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 476.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 476.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 471.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 470.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 469.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 468.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 467.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 466.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 465.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 465.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 465.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 463.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 461.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 460.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 460.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 459.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 458.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 455.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 451.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 450.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 449.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 449.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 447.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 447.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 445.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 445.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 443.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 442.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 442.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 439.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 438.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 438.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 436.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 436.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 435.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 434.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 434.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 432.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 431.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 431.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 431.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 430.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 429.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 426.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 424.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 424.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 424.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 423.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 422.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 422.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 420.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 420.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 420.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 419.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 418.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 417.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 416.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 414.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 414.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 413.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 412.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 409.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 408.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 407.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 405.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 404.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 402.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 402.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 400.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 400.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 400.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 398.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 397.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 397.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 396.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 396.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 395.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 394.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 393.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 392.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 392.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 392.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 391.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 391.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 390.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 390.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 389.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 389.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 388.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 388.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 385.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 385.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 384.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 383.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 382.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 381.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 379.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 378.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 374.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 372.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 372.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 370.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 370.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 369.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 368.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 367.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 367.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 365.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 365.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 360.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 357.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 357.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 356.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 355.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 354.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 354.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 352.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 352.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 348.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 348.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 347.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 347.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 347.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 347.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 344.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 344.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 342.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 341.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 341.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 341.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 340.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 339.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 338.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 338.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 337.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 334.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 334.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 333.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 330.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 328.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 328.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 328.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 327.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 326.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 326.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 325.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 324.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 323.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 323.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 323.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 322.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 316.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 316.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 314.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 313.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 312.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 311.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 307.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 304.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 303.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 302.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 301.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 300.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 299.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 299.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 299.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 297.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 296.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 294.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 291.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 291.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 289.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 287.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 286.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 283.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 282.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 279.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 278.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 275.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 274.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 274.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 272.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 271.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 269.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 269.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 265.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 261.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 257.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 255.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 254.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 253.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 245.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 245.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 239.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 236.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 231.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 229.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 228.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 224.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 224.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 216.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 216.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 213.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 142.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 133.8
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

698.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 698.9
FF:10164-103B2 76 years, female 698.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

327.3
Pig sample Sample description nTPM
Caudate
nTPM: 327.3
Samples: 4

Max nTPM: 389.4
Min nTPM: 290.4
Sample A Female 290.4
Sample B Female 325.7
Sample C Male 389.4
Sample D Male 303.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo