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  • SUMMARY

  • TISSUE

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  • RNASE1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:277.0 nTPM
FANTOM5:160.0 Scaled Tags Per Million
Pig:341.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001140
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 277.0
Samples: 300

Max nTPM: 936.7
Min nTPM: 81.2
Std nTPM: 147.8
Median nTPM: 249.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 936.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 856.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 853.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 832.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 766.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 704.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 702.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 677.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 668.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 664.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 597.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 591.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 587.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 554.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 549.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 535.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 512.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 512.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 510.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 507.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 506.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 500.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 498.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 487.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 487.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 482.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 481.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 478.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 474.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 468.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 458.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 453.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 453.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 451.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 448.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 446.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 444.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 441.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 441.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 439.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 436.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 435.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 435.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 433.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 429.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 428.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 426.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 425.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 418.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 416.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 401.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 399.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 391.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 391.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 386.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 383.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 383.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 383.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 381.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 378.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 376.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 375.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 375.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 369.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 369.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 364.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 363.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 360.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 356.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 350.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 349.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 348.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 344.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 343.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 341.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 341.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 339.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 338.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 336.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 336.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 335.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 333.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 333.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 330.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 330.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 326.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 325.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 324.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 320.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 320.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 319.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 319.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 319.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 315.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 314.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 314.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 314.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 313.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 311.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 309.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 308.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 302.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 302.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 299.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 299.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 299.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 298.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 297.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 295.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 295.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 292.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 292.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 290.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 288.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 287.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 287.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 286.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 285.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 285.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 285.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 284.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 284.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 283.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 279.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 278.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 276.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 275.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 273.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 273.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 272.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 271.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 271.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 270.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 269.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 268.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 268.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 267.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 267.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 266.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 265.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 264.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 259.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 259.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 258.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 258.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 257.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 255.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 252.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 251.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 250.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 248.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 245.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 244.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 242.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 241.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 240.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 239.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 236.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 236.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 235.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 233.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 229.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 227.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 226.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 224.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 224.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 224.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 223.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 222.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 217.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 217.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 217.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 215.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 214.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 212.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 212.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 212.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 208.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 207.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 204.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 204.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 204.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 203.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 202.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 201.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 201.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 200.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 200.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 199.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 196.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 195.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 194.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 193.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 193.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 192.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 191.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 190.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 190.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 190.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 190.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 190.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 189.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 189.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 188.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 188.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 187.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 185.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 183.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 183.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 182.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 179.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 179.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 178.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 178.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 176.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 175.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 175.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 175.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 175.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 175.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 170.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 170.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 170.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 169.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 167.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 167.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 165.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 164.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 164.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 161.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 160.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 160.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 160.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 159.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 157.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 156.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 155.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 154.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 154.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 154.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 153.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 153.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 152.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 152.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 151.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 150.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 150.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 150.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 147.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 147.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 145.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 142.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 140.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 140.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 139.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 136.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 136.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 135.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 135.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 135.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 134.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 133.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 133.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 131.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 131.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 130.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 130.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 129.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 127.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 127.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 127.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 126.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 126.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 122.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 121.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 119.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 119.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 118.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 118.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 117.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 117.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 117.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 117.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 115.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 108.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 105.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 105.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 103.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 101.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 100.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 99.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 98.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 95.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 91.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 87.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 86.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 86.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 84.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 81.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

160.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 160.0
FF:10164-103B2 76 years, female 160.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.0
Pig sample Sample description nTPM
Caudate
nTPM: 341.0
Samples: 4

Max nTPM: 409.4
Min nTPM: 263.1
Sample A Female 283.2
Sample B Female 409.4
Sample C Male 408.3
Sample D Male 263.1

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