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  • TISSUE

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  • NEDD8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:270.8 nTPM
FANTOM5:186.9 Scaled Tags Per Million
Pig:92.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB004082
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 270.8
Samples: 300

Max nTPM: 721.0
Min nTPM: 122.8
Std nTPM: 80.0
Median nTPM: 255.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 721.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 561.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 539.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 528.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 516.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 486.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 468.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 463.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 463.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 455.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 441.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 432.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 431.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 430.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 430.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 419.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 414.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 413.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 410.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 405.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 403.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 403.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 396.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 394.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 386.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 382.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 381.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 375.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 371.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 362.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 361.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 360.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 358.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 356.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 356.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 355.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 355.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 355.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 352.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 351.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 349.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 349.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 348.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 345.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 344.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 344.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 343.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 341.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 341.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 337.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 334.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 330.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 329.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 327.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 327.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 325.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 325.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 323.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 323.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 323.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 320.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 318.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 317.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 316.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 316.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 315.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 314.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 313.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 313.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 313.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 312.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 311.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 310.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 310.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 309.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 309.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 309.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 307.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 306.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 305.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 305.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 304.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 304.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 304.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 304.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 303.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 302.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 301.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 301.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 300.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 297.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 296.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 296.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 295.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 294.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 293.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 293.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 292.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 290.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 289.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 286.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 285.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 285.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 284.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 282.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 281.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 281.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 281.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 280.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 280.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 280.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 278.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 277.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 277.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 276.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 276.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 276.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 276.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 276.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 275.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 275.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 272.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 272.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 272.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 272.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 271.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 270.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 269.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 268.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 267.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 267.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 266.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 266.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 266.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 266.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 265.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 265.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 265.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 263.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 263.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 262.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 261.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 260.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 259.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 259.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 259.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 258.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 257.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 256.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 256.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 255.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 254.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 253.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 253.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 253.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 252.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 252.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 251.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 251.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 251.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 250.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 250.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 249.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 249.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 248.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 248.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 246.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 245.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 245.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 245.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 245.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 245.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 245.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 244.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 243.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 243.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 243.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 242.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 242.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 242.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 241.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 241.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 241.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 241.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 241.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 240.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 240.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 240.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 239.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 239.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 239.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 239.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 238.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 238.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 237.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 237.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 236.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 235.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 235.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 234.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 233.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 232.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 232.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 231.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 231.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 231.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 230.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 229.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 229.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 227.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 227.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 226.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 226.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 226.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 225.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 224.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 224.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 223.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 222.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 222.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 221.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 220.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 220.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 219.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 219.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 219.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 218.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 218.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 217.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 217.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 216.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 215.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 213.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 213.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 213.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 213.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 212.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 211.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 210.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 210.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 210.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 209.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 209.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 208.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 206.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 205.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 204.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 204.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 203.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 202.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 202.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 202.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 201.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 201.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 200.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 200.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 196.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 196.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 194.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 194.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 193.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 192.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 191.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 189.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 188.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 188.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 186.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 186.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 186.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 185.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 184.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 181.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 177.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 176.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 175.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 175.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 175.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 175.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 173.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 173.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 173.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 168.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 167.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 166.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 166.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 163.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 162.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 159.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 157.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 156.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 155.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 153.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 150.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 145.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 141.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 141.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 139.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 136.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 133.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 122.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

186.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 186.9
FF:10164-103B2 76 years, female 186.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.2
Pig sample Sample description nTPM
Caudate
nTPM: 92.2
Samples: 4

Max nTPM: 104.8
Min nTPM: 81.1
Sample A Female 86.9
Sample B Female 95.9
Sample C Male 104.8
Sample D Male 81.1

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