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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • DAD1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:175.3 nTPM
FANTOM5:111.1 Scaled Tags Per Million
Pig:62.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA028882
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 175.3
Samples: 300

Max nTPM: 417.7
Min nTPM: 99.8
Std nTPM: 45.2
Median nTPM: 168.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 417.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 371.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 304.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 302.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 300.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 295.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 294.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 293.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 271.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 267.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 264.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 263.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 260.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 259.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 255.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 254.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 251.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 250.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 247.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 246.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 246.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 244.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 243.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 240.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 240.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 239.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 234.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 232.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 232.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 231.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 231.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 230.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 229.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 229.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 227.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 227.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 227.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 227.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 223.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 223.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 223.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 221.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 221.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 220.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 220.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 220.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 216.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 216.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 216.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 215.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 215.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 213.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 212.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 212.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 212.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 210.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 210.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 209.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 208.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 207.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 207.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 207.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 206.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 206.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 205.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 205.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 205.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 203.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 203.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 202.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 201.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 200.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 200.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 200.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 199.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 199.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 198.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 197.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 197.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 197.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 196.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 195.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 195.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 194.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 193.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 193.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 192.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 192.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 191.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 191.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 191.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 190.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 190.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 190.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 190.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 189.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 188.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 188.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 188.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 187.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 187.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 187.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 186.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 185.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 185.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 184.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 184.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 184.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 183.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 183.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 183.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 183.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 182.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 182.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 182.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 181.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 180.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 180.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 180.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 180.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 180.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 179.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 179.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 179.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 178.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 177.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 176.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 176.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 175.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 175.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 175.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 175.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 174.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 174.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 174.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 174.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 173.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 172.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 171.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 171.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 171.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 171.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 170.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 170.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 169.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 169.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 168.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 168.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 168.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 168.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 168.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 168.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 168.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 167.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 167.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 166.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 166.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 166.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 166.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 166.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 166.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 165.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 165.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 164.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 163.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 162.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 162.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 162.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 162.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 161.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 161.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 161.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 160.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 160.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 160.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 158.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 158.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 158.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 158.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 158.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 158.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 158.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 157.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 157.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 157.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 157.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 157.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 157.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 156.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 156.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 156.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 156.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 156.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 156.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 155.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 155.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 154.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 154.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 154.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 153.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 153.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 152.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 152.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 151.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 151.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 150.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 149.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 149.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 149.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 148.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 148.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 147.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 147.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 147.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 147.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 146.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 146.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 146.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 146.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 145.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 144.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 144.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 143.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 142.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 142.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 142.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 142.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 141.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 141.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 140.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 140.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 140.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 139.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 139.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 139.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 138.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 138.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 137.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 136.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 136.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 135.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 135.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 135.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 134.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 134.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 134.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 134.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 133.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 133.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 132.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 132.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 132.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 131.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 131.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 131.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 130.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 129.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 129.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 128.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 128.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 128.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 127.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 127.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 127.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 126.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 126.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 125.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 124.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 124.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 124.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 123.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 123.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 122.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 122.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 122.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 120.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 119.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 119.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 119.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 119.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 119.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 119.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 118.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 118.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 118.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 117.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 115.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 113.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 112.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 111.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 111.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 110.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 110.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 108.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 107.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 107.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 106.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 101.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 99.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 111.1
FF:10164-103B2 76 years, female 111.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.3
Pig sample Sample description nTPM
Caudate
nTPM: 62.3
Samples: 4

Max nTPM: 67.6
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 67.6
Sample C Male 57.9
Sample D Male 67.6

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