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ATP5IF1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ATP5IF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:294.3 nTPM
FANTOM5:534.0 Scaled Tags Per Million
Pig:218.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA027999
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 294.3
Samples: 300

Max nTPM: 782.5
Min nTPM: 87.3
Std nTPM: 116.0
Median nTPM: 287.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 782.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 684.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 681.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 654.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 654.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 653.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 634.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 632.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 588.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 557.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 549.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 536.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 511.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 507.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 488.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 487.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 476.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 466.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 466.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 464.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 463.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 456.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 455.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 451.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 444.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 444.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 443.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 439.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 433.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 433.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 432.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 428.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 426.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 425.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 425.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 422.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 421.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 421.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 417.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 417.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 415.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 411.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 409.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 407.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 404.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 397.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 397.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 396.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 395.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 395.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 392.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 391.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 390.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 379.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 378.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 378.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 378.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 376.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 374.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 373.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 371.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 371.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 371.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 370.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 370.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 369.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 368.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 365.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 364.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 363.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 357.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 356.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 356.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 355.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 354.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 354.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 354.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 354.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 353.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 351.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 350.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 350.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 348.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 346.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 346.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 343.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 342.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 340.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 340.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 339.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 339.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 339.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 334.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 333.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 332.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 330.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 330.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 328.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 328.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 327.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 327.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 327.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 327.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 326.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 326.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 324.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 324.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 323.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 322.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 322.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 322.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 321.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 320.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 318.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 315.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 314.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 313.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 313.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 313.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 313.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 311.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 310.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 307.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 307.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 307.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 306.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 306.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 305.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 303.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 302.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 302.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 298.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 298.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 298.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 295.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 295.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 295.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 294.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 294.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 294.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 293.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 293.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 292.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 292.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 291.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 290.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 290.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 288.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 287.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 287.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 286.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 285.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 285.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 284.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 284.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 283.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 282.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 282.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 280.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 280.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 278.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 277.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 276.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 274.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 274.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 272.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 272.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 272.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 271.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 271.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 270.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 269.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 268.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 267.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 266.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 266.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 265.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 265.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 262.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 261.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 261.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 259.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 259.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 257.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 255.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 254.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 250.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 249.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 248.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 247.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 246.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 246.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 246.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 245.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 244.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 244.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 243.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 242.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 241.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 239.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 237.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 236.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 235.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 234.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 234.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 233.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 232.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 230.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 228.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 226.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 226.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 226.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 223.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 222.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 221.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 218.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 217.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 215.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 214.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 213.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 212.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 211.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 211.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 210.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 209.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 207.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 205.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 203.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 201.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 201.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 200.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 198.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 197.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 195.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 195.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 194.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 194.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 194.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 193.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 193.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 190.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 188.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 185.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 184.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 184.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 179.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 179.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 178.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 177.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 175.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 174.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 174.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 172.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 171.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 170.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 169.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 167.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 167.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 167.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 167.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 165.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 165.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 163.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 162.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 157.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 156.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 155.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 154.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 154.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 153.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 153.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 152.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 151.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 150.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 150.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 149.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 149.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 147.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 144.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 143.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 139.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 139.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 139.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 136.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 135.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 133.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 132.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 130.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 130.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 126.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 126.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 125.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 124.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 123.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 123.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 120.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 119.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 114.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 103.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 87.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

534.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 534.0
FF:10164-103B2 76 years, female 534.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

218.9
Pig sample Sample description nTPM
Caudate
nTPM: 218.9
Samples: 4

Max nTPM: 250.6
Min nTPM: 201.6
Sample A Female 209.5
Sample B Female 214.0
Sample C Male 250.6
Sample D Male 201.6

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