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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:3078.9 nTPM
FANTOM5:2454.2 Scaled Tags Per Million
Pig:963.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA056030Antibody HPA063513Antibody CAB000039
Glial cells MediumLowMedium
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3078.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3078.9
Samples: 300

Max nTPM: 12775.3
Min nTPM: 100.8
Std nTPM: 2106.4
Median nTPM: 2503.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12775.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11218.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 10044.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 9594.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 9377.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 9183.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 8935.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 8492.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 8330.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8231.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 8077.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 7913.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 7904.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 7782.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 7678.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 7501.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 7486.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 7452.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 7109.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 7032.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6945.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 6905.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 6861.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 6836.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 6641.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 6604.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 6571.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 6549.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 6456.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 5768.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5715.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 5712.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 5611.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 5569.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 5561.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 5487.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 5471.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 5451.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 5422.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 5414.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 5411.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5402.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 5389.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 5359.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 5307.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 5287.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 5249.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 5189.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 5146.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 5145.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 5113.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 5076.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 4938.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 4925.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 4868.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 4841.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4838.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 4790.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4707.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 4596.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 4536.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 4492.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4470.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4452.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 4375.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 4337.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 4244.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4202.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 4137.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 4129.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 4096.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 3992.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 3909.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 3865.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3793.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3792.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 3758.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 3697.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 3640.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3618.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 3590.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 3585.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 3580.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 3558.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 3557.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3530.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 3493.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3473.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 3453.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 3436.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 3429.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 3386.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 3349.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 3340.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3334.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 3328.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3310.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 3305.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 3300.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 3271.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3262.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3239.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 3222.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 3193.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3162.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 3128.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 3127.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3119.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 3077.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 3052.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 3034.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 3011.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 2972.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2949.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2945.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2942.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2937.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2926.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2889.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2888.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 2854.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2839.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 2837.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2795.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2791.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2790.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2787.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2743.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2742.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 2739.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2733.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 2688.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 2664.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2662.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2659.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2649.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2647.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2647.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 2645.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2610.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 2607.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 2607.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2606.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 2602.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2599.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2554.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2549.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2547.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2536.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2508.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2498.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2479.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 2475.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2444.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2421.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 2415.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2404.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2401.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2400.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2384.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2378.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2330.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2304.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 2268.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 2267.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2266.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2264.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2241.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 2235.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2233.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2231.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2230.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2230.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2215.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2196.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 2181.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2172.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 2163.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 2155.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 2151.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2143.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2132.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2124.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 2099.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 2036.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 2031.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1992.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1991.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1974.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1963.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1916.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1911.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1911.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1904.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1894.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1892.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1884.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1883.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1881.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1881.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1877.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1851.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1844.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1827.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1816.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1810.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1783.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1783.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1777.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1763.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1750.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1744.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1734.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1699.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1689.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1678.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1678.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1677.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1673.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1662.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1661.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1654.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1648.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1633.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1627.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1627.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1625.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1620.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1603.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1589.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1574.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1566.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1560.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1555.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1541.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1519.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1511.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1506.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1505.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1487.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1480.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1476.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1451.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1431.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1421.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1403.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1403.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1399.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1396.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1391.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1378.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1378.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1377.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1364.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1352.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1345.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1334.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1321.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1285.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1284.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1236.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1220.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1168.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1152.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1139.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1138.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1137.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1116.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1114.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1093.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1082.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1057.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1030.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1019.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 987.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 955.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 943.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 931.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 923.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 911.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 909.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 890.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 834.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 829.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 808.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 771.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 770.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 741.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 713.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 713.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 700.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 674.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 642.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 578.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 571.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 499.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 390.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 316.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 181.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 100.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2454.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2454.2
FF:10164-103B2 76 years, female 2454.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

963.9
Pig sample Sample description nTPM
Caudate
nTPM: 963.9
Samples: 4

Max nTPM: 1123.4
Min nTPM: 835.4
Sample A Female 964.6
Sample B Female 932.1
Sample C Male 1123.4
Sample D Male 835.4

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