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PPP1R1B
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • PPP1R1B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1368.7 nTPM
FANTOM5:1200.8 Scaled Tags Per Million
Pig:1790.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA048630Antibody HPA061142Antibody CAB004026
Glial cells MediumNot detectedLow
Neuronal cells MediumNot detectedHigh






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1368.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1368.7
Samples: 300

Max nTPM: 3249.7
Min nTPM: 66.7
Std nTPM: 715.8
Median nTPM: 1332.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3249.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3117.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3064.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3061.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3018.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2889.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 2874.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2789.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2755.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 2738.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 2711.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2655.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 2597.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2590.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2578.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2577.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2575.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 2558.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2484.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 2465.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 2445.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2433.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2402.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2393.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 2384.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2366.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2361.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 2344.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2343.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2331.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2326.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2278.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2268.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 2267.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2260.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2253.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2235.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2233.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2233.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2230.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2219.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 2215.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2203.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2194.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2193.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2183.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2171.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 2169.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2153.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 2151.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2143.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 2141.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2140.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2133.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2121.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2109.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2102.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2094.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2070.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2069.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2068.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2060.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2059.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2035.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 2033.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2007.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1986.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1986.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1982.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1980.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1968.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1953.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1942.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1941.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1933.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1924.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1922.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1921.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1915.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1903.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1898.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1886.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1871.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1870.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1825.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1814.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1807.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1804.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1797.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1794.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1788.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1786.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1780.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1777.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1762.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1762.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1755.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1753.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1736.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1724.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1710.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1707.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1701.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1694.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1681.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1673.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1673.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1673.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1668.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1658.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1650.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1645.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1635.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1634.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1624.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1606.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1589.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1565.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1552.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1550.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1544.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1533.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1533.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1527.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1521.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1516.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1504.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1504.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1497.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1496.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1476.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1475.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1475.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1457.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1453.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1447.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1436.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1435.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1434.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1419.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1417.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1391.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1389.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1388.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1380.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1378.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1371.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1351.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1347.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1332.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1332.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1323.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1309.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1300.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1282.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1280.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1278.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1273.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1272.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1265.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1259.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1240.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1205.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1205.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1198.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1183.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1177.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1164.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1151.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1150.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1141.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1137.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1134.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1128.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1127.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1117.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1104.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1100.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1100.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1090.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1087.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1082.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1055.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1050.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1045.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1037.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1031.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1026.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1014.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1012.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1002.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 999.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 995.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 971.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 963.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 959.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 953.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 950.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 950.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 947.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 928.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 927.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 924.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 916.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 895.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 894.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 888.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 886.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 883.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 879.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 842.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 842.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 796.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 780.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 762.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 755.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 749.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 749.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 746.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 743.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 738.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 729.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 728.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 720.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 704.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 701.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 694.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 690.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 683.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 675.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 674.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 672.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 671.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 666.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 656.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 655.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 654.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 654.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 653.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 653.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 650.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 645.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 631.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 629.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 626.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 619.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 619.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 613.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 612.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 612.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 610.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 591.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 591.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 591.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 579.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 570.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 564.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 549.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 545.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 542.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 540.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 526.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 518.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 512.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 505.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 503.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 495.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 489.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 487.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 485.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 484.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 483.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 477.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 476.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 476.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 466.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 462.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 454.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 451.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 450.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 411.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 410.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 388.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 387.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 383.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 382.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 374.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 352.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 337.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 325.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 311.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 306.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 260.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 198.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 193.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 158.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 130.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 121.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 110.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 66.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1200.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1200.8
FF:10164-103B2 76 years, female 1200.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1790.5
Pig sample Sample description nTPM
Caudate
nTPM: 1790.5
Samples: 4

Max nTPM: 2505.3
Min nTPM: 1252.2
Sample A Female 1252.2
Sample B Female 1508.0
Sample C Male 2505.3
Sample D Male 1896.6

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